EY665614

Overview
NameEY665614
Unique NameEY665614
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8097 contig Csv1_Contig8097:15..815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 2.105e-86
Identity = 147/196 (75.00%), Postives = 162/196 (82.65%), Query Frame = 1
Query:  139 QKSRSVAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGALV*PTWLGIPFPRKRK 726
            QK+ S+ GATKASF            A  G+RSV+VSA AADP+RPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPE+L+WN Q+E+VH RWAMLGAAGIFIPE LTK+G+LNTPSWYTAGE EYFTDTTTLF++E++ IGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGG    P   G   P K K
Sbjct:   21 QKNGSIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIK 216          

HSP 2 Score: 24.6386 bits (52), Expect = 2.105e-86
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 3
Query:  714 PKKERNWRLRKSKMEKWVILAGMGAWF 794
            P K +  R ++ K  +  +LA MGAWF
Sbjct:  212 PAKIKELRTKEIKNGRLAMLAVMGAWF 238          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 7.966e-83
Identity = 143/196 (72.96%), Postives = 155/196 (79.08%), Query Frame = 1
Query:  139 QKSRSVAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGALV*PTWLGIPFPRKRK 726
            +++ S+ G TKASF             T   RS +    AADP+RPLWFPGSTPP WLDGSLPGDFGFDPLGL SDPE+LRWN Q+E+VHCRWAMLGAAGIFIPELLTK+GILNTPSWYTAGE EYFTDTTTLFIVE++ IGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGG    P   G   P K K
Sbjct:   21 RRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIK 216          

HSP 2 Score: 24.6386 bits (52), Expect = 7.966e-83
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 3
Query:  714 PKKERNWRLRKSKMEKWVILAGMGAWF 794
            P K +  R ++ K  +  +LA MGAWF
Sbjct:  212 PAKIKELRTKEIKNGRLAMLAVMGAWF 238          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.518e-41
Identity = 76/132 (57.58%), Postives = 92/132 (69.70%), Query Frame = 1
Query:  280 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGG 675
            W PG   P +L GSLPGD GFDPLGL  DPE LRW VQ+E+V+ RWAMLG AG+ +PE+ T +GI+N P WY AG+ EYF  ++TLF++E I   + E RRW DI  PG VN DPIF    L   +VGYPGG
Sbjct:   56 WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGG 187          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.589e-41
Identity = 76/147 (51.70%), Postives = 98/147 (66.67%), Query Frame = 1
Query:  235 SVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGG 675
            S   S+   +  +  W PG   P++L GSL GD GFDPLGL  DPE L+W VQ+E+V+ RWAMLG AG+ +PE+ TK+GI+N P WY AG+ +YF  ++TLF++E I   + E RRW DI  PG VN DPIF    L   +VGYPGG
Sbjct:   42 SAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGG 188          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.869e-32
Identity = 73/148 (49.32%), Postives = 90/148 (60.81%), Query Frame = 1
Query:  232 RSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWY-TAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPG 672
            R V+V A  +      W PG   P +LDGSL GD GFDPL L  DPE LRW VQ+++V+ RWAMLG AG+ IPE+LTK G++N P W    G+  YF  ++T   V M    + E RRW DI  PG VN DPIF +  L   + GYPG
Sbjct:   26 RDVAVQAKGS------WLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHMSST-YVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPG 166          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.686e-24
Identity = 70/174 (40.23%), Postives = 89/174 (51.15%), Query Frame = 1
Query:  232 RSVSVSAAAADPNRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETL------RWNVQSEIVHCRWAMLGAAGIFIPELLTKLGIL---NTPSWY------TAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTG--TDVGYPGGALV*PTWLG 702
            R+ S        NR LWF       +LDG LPGDFGFDPLGL SDPE        +W    E+++ R+AMLGAAG   PE+L K G++      +W+       AG   Y+ D  TLF++EM  +G+AE RR+ D  KPG +         K  G   D  YPGG L  P   G
Sbjct:   40 RAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFG 212          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.367e-24
Identity = 72/181 (39.78%), Postives = 93/181 (51.38%), Query Frame = 1
Query:  229 TRSVSVSAAAADP------NRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETL------RWNVQSEIVHCRWAMLGAAGIFIPELLTKLGIL---NTPSWY------TAGELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTG--TDVGYPGGALV*PTWLG 702
            +R   V AAA  P      +RPLWF       +LDGSLPGD+GFDPLGL SDPE        RW    E+++ R+AMLGA G   PE L K+G++      +W+       AG   Y+ D  TLF++EM  +G+AE RR+ D  KPG +         K  G   +  YPGG    P   G
Sbjct:   35 SRKGLVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFG 214          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.427e-23
Identity = 68/195 (34.87%), Postives = 95/195 (48.72%), Query Frame = 1
Query:  154 VAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNRPLWFPGST------PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA----GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFP------NNKLTGTDVGYPGGALV*P 690
            ++G  K+S              +  +R + V AAAA P +  W P          PEWLDGSLPGDFGFDPLGLG DP  L+W  ++E++H RWAML   GIF+ +  T +       W+ A    G +  F+   TL   +++ +GW E +RW D   P   + +   P      N   +  + GYPGG    P
Sbjct:   19 LSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKS-WIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGI------PWFEAGADPGAVAPFS-FGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDP 205          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.745e-21
Identity = 64/173 (36.99%), Postives = 88/173 (50.87%), Query Frame = 1
Query:  223 AGTRSVSVSAAAADPNRPLWFPGS------TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA----GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK-------LTGTDVGYPGGALV*P 690
            A  +  +V AAAA  +   W P          PEWLDGSLPGD+GFDPLGLG DP  L+W  ++E++H RWAM    GIF+ +  + +       W+ A    G +  F+   TL   ++I +GW E +RW D   P   + +   P +K        TG + GYPGG    P
Sbjct:   39 ATPKRFTVLAAAAKKS---WIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFS-FGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTG-EQGYPGGKFFDP 200          
BLAST of EY665614 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.887e-21
Identity = 62/166 (37.35%), Postives = 85/166 (51.20%), Query Frame = 1
Query:  244 VSAAAADPNRPLWFPGS------TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTA----GELEYFTDTTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNK-------LTGTDVGYPGGALV*P 690
            V+AAA  P +  W P          PEWLDGSLPGDFGFDPLGLG DP  L+W  ++E++H RWAM    GIF+ +  + +       W+ A    G +  F+   +L   +++ +GW E +RW D       + D   P +K        TG + GYPGG    P
Sbjct:   44 VAAAAVAPKKS-WIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFS-FGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTG-EQGYPGGKFFDP 200          
The following BLAST results are available for this feature:
BLAST of EY665614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB12_PETHY2.105e-8675.00Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC7.966e-8372.96Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_PEA1.518e-4157.58Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH2.589e-4151.70Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB120_HORVU2.869e-3249.32Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB13_SOLLC1.686e-2440.23Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA8.367e-2439.78Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB4_SPIOL1.427e-2334.87Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4A_SOLLC1.745e-2136.99Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC3.887e-2137.35Chlorophyll a-b binding protein CP24 10B, chloropl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-070-F02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665614 ID=EY665614; Name=EY665614; organism=Citrus sinensis; type=EST; length=802bp
GTTCACTGCCAATTCGCTATTCTACTTTACACGCACACAAACGCCAGTCA
TAATTTTGCTGAAAGCCTTTGCCTGGTAGTAAAAATGGCTTCCGTTTGTG
CTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAGAGTAGA
TCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAAGCTGAA
ATTGAGAAAAAACGGAGCAACAGCGGGAACACGATCGGTTTCAGTGAGTG
CGGCTGCAGCTGATCCTAACAGGCCTCTCTGGTTCCCAGGCAGCACTCCT
CCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGATCCTCT
TGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAATCAGAAA
TTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTCATTCCG
GAATTGTTAACAAAACTTGGAATCCTCAACACTCCATCCTGGTACACAGC
TGGGGAGCTAGAGTACTTCACAGACACCACCACCCTGTTCATTGTTGAGA
TGATATTCATAGGCTGGGCAGAGGGCAGACGGTGGGCCGACATTATAAAG
CCAGGCTGTGTGAACACTGACCCGATCTTCCCCAACAACAAGCTCACCGG
CACCGATGTTGGGTACCCAGGTGGGGCTTTGGTTTGACCCACTTGGCTGG
GGATCCCGTTCCCCCGAAAAAGGAAAGGAACTGGAGACTAAGGAAATCAA
AAATGGAAAAATGGGTAATTTTGGCTGGGATGGGGGCTTGGTTTCCACCC
AT
back to top