CV886749

Overview
NameCV886749
Unique NameCV886749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886749 vs. ExPASy Swiss-Prot
Match: PFD2_ARATH (Probable prefoldin subunit 2 OS=Arabidopsis thaliana GN=At3g22480 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.093e-48
Identity = 98/139 (70.50%), Postives = 117/139 (84.17%), Query Frame = 3
Query:  165 REPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVPVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRKPESESKDDGNRKEGSAQGVLVGPAGSSE 581
            REP NEQ V NMY   RSEL+QIYS IT+LEM+ SEHSLVINAI+PLD SRKC+RMIGGV VERTI EVLPAVQRNK+G+EEV+ +L E L  KKK++++FEAKYKIRI K E ++K+ GN+KEG+AQGVLVG A SS+
Sbjct:   11 REPPNEQAVLNMYEGKRSELSQIYSNITDLEMQVSEHSLVINAIQPLDQSRKCFRMIGGVLVERTIKEVLPAVQRNKDGLEEVVRKLYETLEKKKKDLTEFEAKYKIRITKQE-DNKEGGNKKEGNAQGVLVGAASSSQ 148          
BLAST of CV886749 vs. ExPASy Swiss-Prot
Match: PFD2_HUMAN (Prefoldin subunit 2 OS=Homo sapiens GN=PFDN2 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.619e-26
Identity = 61/131 (46.56%), Postives = 89/131 (67.94%), Query Frame = 3
Query:  180 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVPVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI----RKPESESKDDGNRKEGSAQGVLV 560
            EQ++A  +  +R E   + SK  ELEME +EHSLVI+ +K +D +RKCYRM+GGV VERT+ EVLPA++ NKE I+++I  L + L AK KE+++F  K+ IR+     KP ++   +G   + S+ GVLV
Sbjct:   24 EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLMGEDEKPAAKENSEGAGAKASSAGVLV 153          
BLAST of CV886749 vs. ExPASy Swiss-Prot
Match: PFD2_BOVIN (Prefoldin subunit 2 OS=Bos taurus GN=PFDN2 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.619e-26
Identity = 61/131 (46.56%), Postives = 89/131 (67.94%), Query Frame = 3
Query:  180 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVPVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI----RKPESESKDDGNRKEGSAQGVLV 560
            EQ++A  +  +R E   + SK  ELEME +EHSLVI+ +K +D +RKCYRM+GGV VERT+ EVLPA++ NKE I+++I  L + L AK KE+++F  K+ IR+     KP ++   +G   + S+ GVLV
Sbjct:   24 EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERTVKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLMGEDEKPAAKENSEGAGAKASSAGVLV 153          
BLAST of CV886749 vs. ExPASy Swiss-Prot
Match: PFD2_RAT (Prefoldin subunit 2 OS=Rattus norvegicus GN=Pfdn2 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.420e-26
Identity = 61/131 (46.56%), Postives = 90/131 (68.70%), Query Frame = 3
Query:  180 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVPVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI----RKPESESKDDGNRKEGSAQGVLV 560
            EQ++A  +  +R E   + SK  ELEME +EHSLVI+ +K +D +RKCYRM+GGV VERT+ EVLPA++ NKE I+++I  L++ L AK KE+++F  K+ IR+     KP ++   +G   + S+ GVLV
Sbjct:   24 EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERTVKEVLPALEGNKEQIQKIIETLSQQLQAKGKELNEFREKHNIRLMGEDEKPAAKENSEGAGAKSSSAGVLV 153          
BLAST of CV886749 vs. ExPASy Swiss-Prot
Match: PFD2_MOUSE (Prefoldin subunit 2 OS=Mus musculus GN=Pfdn2 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.420e-26
Identity = 61/131 (46.56%), Postives = 90/131 (68.70%), Query Frame = 3
Query:  180 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVPVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI----RKPESESKDDGNRKEGSAQGVLV 560
            EQ++A  +  +R E   + SK  ELEME +EHSLVI+ +K +D +RKCYRM+GGV VERT+ EVLPA++ NKE I+++I  L++ L AK KE+++F  K+ IR+     KP ++   +G   + S+ GVLV
Sbjct:   24 EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERTVKEVLPALEGNKEQIQKIIETLSQQLQAKGKELNEFREKHNIRLMGEDEKPAAKENSEGAGAKASSAGVLV 153          
BLAST of CV886749 vs. ExPASy Swiss-Prot
Match: PFD2_DICDI (Probable prefoldin subunit 2 OS=Dictyostelium discoideum GN=pfdn2 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.100e-24
Identity = 51/112 (45.54%), Postives = 84/112 (75.00%), Query Frame = 3
Query:  156 TERREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVPVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI 491
            +++++ + E  +   Y  ++S+  QI S+I+E E +  E+ LVINAI+ L+ +RKC+RM+GGV VERT+ EVLP +++N++GI+EV+ +L+E L+ K KE++DF A YKI+I
Sbjct:    2 SQQKQQLTENQIIEHYKDLKSQQQQIISRISEFESDVGEYGLVINAIQNLESNRKCFRMVGGVLVERTVGEVLPQIKQNRDGIKEVVKKLDENLSIKTKELNDFVALYKIKI 113          
BLAST of CV886749 vs. ExPASy Swiss-Prot
Match: PFD2_DROME (Probable prefoldin subunit 2 OS=Drosophila melanogaster GN=l(3)01239 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.335e-16
Identity = 40/114 (35.09%), Postives = 68/114 (59.65%), Query Frame = 3
Query:  156 TERREP-VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVPVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIR 494
            TE  +P ++++ +   +  +R+E   + + +  LEM+  EH  VI  ++  DP RKC+R IGGV  ERT+ EVLP +  NK+ I + I  +   L+ K  E++ F+ ++ I+IR
Sbjct:    3 TESAKPALSQEAIVAQFQQLRNEQRNLVNSLNTLEMDLREHKTVIETLEAADPERKCFRQIGGVLCERTVKEVLPQLVENKDFIAKTIQMVTNDLSKKGSELNKFKEEHNIKIR 116          
BLAST of CV886749 vs. ExPASy Swiss-Prot
Match: PFD2_SCHPO (Probable prefoldin subunit 2 OS=Schizosaccharomyces pombe GN=SPAC227.10 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.592e-15
Identity = 40/108 (37.04%), Postives = 65/108 (60.19%), Query Frame = 3
Query:  168 EPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVPVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI 491
            +P  +QI+   Y S +S L QI  KI +LE +A EH LV++ +  +D +R+C+RMI GV VERT+  V+P ++  +EGI+  +  L +     + E   F+   KI++
Sbjct:    4 QPSRQQILQTQYNSYKSRLQQIAQKIVDLETDADEHKLVMDTLNSMDNNRRCFRMIHGVLVERTVGTVVPILKTTQEGIQTAMNGLLDQYKQLEAEFQKFQKDNKIQV 111          
BLAST of CV886749 vs. ExPASy Swiss-Prot
Match: PFD2_YEAST (Prefoldin subunit 2 OS=Saccharomyces cerevisiae GN=GIM4 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.490e-13
Identity = 37/99 (37.37%), Postives = 57/99 (57.58%), Query Frame = 3
Query:  201 YTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVPVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRK 497
            Y   +  L ++ +KI EL  +  EH++VI  +K  +P+RKCYRMIGG  VE  +   LP ++  KE IE  I+++ E L    KE   ++   KI++ K
Sbjct:   12 YNEYKQILEELQTKIIELGHDKDEHTIVIKTLKDAEPTRKCYRMIGGALVESDVQTSLPILETKKENIEGTISKMKETLIQTAKEFEKWKKDNKIQVVK 110          
BLAST of CV886749 vs. ExPASy Swiss-Prot
Match: PFD2_CAEEL (Probable prefoldin subunit 2 OS=Caenorhabditis elegans GN=tag-355 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 33/108 (30.56%), Postives = 60/108 (55.56%), Query Frame = 3
Query:  168 EPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVPVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI 491
            E   ++ V   + ++R +   I +++T +E E  E   V+  IK L+P +KC+R+I    VE T+ +V+P +Q N   +  V  +LN+ L  K KE++  +  + IR+
Sbjct:   13 EQEEQRKVVEKFKALRDQQQDIAAEVTRIEEERREFGRVLEVIKDLEPDQKCFRLISDTLVEYTVKDVIPDLQNNIANLTIVSKQLNDQLVEKGKELNTHKTTHNIRL 120          
The following BLAST results are available for this feature:
BLAST of CV886749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PFD2_ARATH1.093e-4870.50Probable prefoldin subunit 2 OS=Arabidopsis thalia... [more]
PFD2_HUMAN2.619e-2646.56Prefoldin subunit 2 OS=Homo sapiens GN=PFDN2 PE=1 ... [more]
PFD2_BOVIN2.619e-2646.56Prefoldin subunit 2 OS=Bos taurus GN=PFDN2 PE=2 SV... [more]
PFD2_RAT3.420e-2646.56Prefoldin subunit 2 OS=Rattus norvegicus GN=Pfdn2 ... [more]
PFD2_MOUSE3.420e-2646.56Prefoldin subunit 2 OS=Mus musculus GN=Pfdn2 PE=2 ... [more]
PFD2_DICDI1.100e-2445.54Probable prefoldin subunit 2 OS=Dictyostelium disc... [more]
PFD2_DROME9.335e-1635.09Probable prefoldin subunit 2 OS=Drosophila melanog... [more]
PFD2_SCHPO1.592e-1537.04Probable prefoldin subunit 2 OS=Schizosaccharomyce... [more]
PFD2_YEAST1.490e-1337.37Prefoldin subunit 2 OS=Saccharomyces cerevisiae GN... [more]
PFD2_CAEEL4.059e-1130.56Probable prefoldin subunit 2 OS=Caenorhabditis ele... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_025A02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_025_T3_A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886749 ID=CV886749; Name=CV886749; organism=Citrus sinensis; type=EST; length=733bp
CACCGTTTATCTTGGTTTTTTGGTTTGCTCTCTTCGTCTCTCTTCAAGTC
CTGAGACCTGAGTTTCTGCTCCCTCTTGTCTAGGGTTAGGACCTAGGGAG
GGTTCACGCACTTAAATTAGATTCAAGAATCAGAATCATGGCTGGCAGAG
CTGAAACTGAGCGCAGGGAACCGGTAAATGAACAAATAGTGGCAAATATG
TACACATCTATGAGATCTGAACTAAATCAAATCTACTCGAAAATTACCGA
ACTGGAGATGGAGGCAAGTGAGCACTCATTGGTTATTAATGCTATTAAGC
CACTTGACCCTTCTAGAAAGTGCTACCGGATGATTGGAGGTGTGCCGGTG
GAGAGAACAATCAGTGAAGTCCTTCCTGCTGTGCAACGCAATAAAGAGGG
GATAGAGGAGGTAATTGCAAGGCTCAACGAGGCCTTAGCAGCGAAGAAGA
AAGAAATTTCCGACTTTGAAGCTAAATATAAAATTAGGATTCGAAAGCCT
GAAAGTGAGTCCAAGGATGATGGTAACCGGAAGGAAGGTTCGGCTCAAGG
AGTCCTTGTTGGCCCTGCTGGTTCAAGTGAGTGATAGGTGTTGTATTTTA
ATTCCACCGTGATTTCTTGAACTTGCTGGATGGAAGTATTTTGGATATTT
ATTACACCTGCTGTTAGAGAGCTGGGCCTGCTAATGGAGTGTAACAGATA
TTGCTGAATGATAATTTGTGCTTGATAAAAAAA
back to top