EL492457

Overview
NameEL492457
Unique NameEL492457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length287
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11438 contig Csv1_Contig11438:165..451. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492457 vs. ExPASy Swiss-Prot
Match: UEV1C_ARATH (Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana GN=UEV1C PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.239e-41
Identity = 74/86 (86.05%), Postives = 78/86 (90.70%), Query Frame = 2
Query:   29 PRSFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVTQDS 286
            PR+FR      RGEKGIGDGTVSYGMDDGDDIYMRSWTGT+IGPHNTVHEGRIYQLKLFCDKDYPEKPP+VRFHSRINMTCV  D+
Sbjct:   12 PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHDT 97          
BLAST of EL492457 vs. ExPASy Swiss-Prot
Match: UEV1D_ARATH (Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana GN=UEV1D PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.565e-40
Identity = 71/86 (82.56%), Postives = 77/86 (89.53%), Query Frame = 2
Query:   29 PRSFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVTQDS 286
            PR+FR      RGEKGIGDGTVSYGMDDGDDIYMRSWTGT+IGPHNTVHEGRIYQLKLFCDKDYPEKPP+VRFHSR+NM CV  ++
Sbjct:   13 PRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRVNMACVNHET 98          
BLAST of EL492457 vs. ExPASy Swiss-Prot
Match: UEV1B_ARATH (Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana GN=UEV1B PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.078e-33
Identity = 61/86 (70.93%), Postives = 71/86 (82.56%), Query Frame = 2
Query:   29 PRSFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVTQDS 286
            PR+FR      RGEKGIGDGTVSYGMDD DDI M+SWTGT++GPHNT +EG+I+QLKLFC KDYPE PP+VRF SRINM CV  ++
Sbjct:   11 PRNFRLLEELERGEKGIGDGTVSYGMDDADDILMQSWTGTILGPHNTAYEGKIFQLKLFCGKDYPESPPTVRFQSRINMACVNPEN 96          
BLAST of EL492457 vs. ExPASy Swiss-Prot
Match: UEV1A_ARATH (Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana GN=UEV1A PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.404e-32
Identity = 59/86 (68.60%), Postives = 71/86 (82.56%), Query Frame = 2
Query:   29 PRSFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVTQDS 286
            PR+FR      RGEKGIGDGTVSYGMDD DDIYM+SWTGT++GP NT +EG+I+QLKLFC K+YPE PP+VRF +RINM CV  ++
Sbjct:   11 PRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTILGPPNTAYEGKIFQLKLFCGKEYPESPPTVRFQTRINMACVNPET 96          
BLAST of EL492457 vs. ExPASy Swiss-Prot
Match: UBE2V_DICDI (Probable ubiquitin-conjugating enzyme E2 variant OS=Dictyostelium discoideum GN=ube2v PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.819e-24
Identity = 47/86 (54.65%), Postives = 60/86 (69.77%), Query Frame = 2
Query:   29 PRSFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVTQDS 286
            PR+F        GEK  GDGT+SYG++  DDI + SW GT+IGP NT  + R Y LKL+CDKDYP KPP+VRF ++IN+ CV Q +
Sbjct:    5 PRNFVLLEELESGEKSTGDGTISYGLESPDDILLSSWIGTIIGPQNTPFDNRFYSLKLYCDKDYPNKPPTVRFTTKINIGCVNQQN 90          
BLAST of EL492457 vs. ExPASy Swiss-Prot
Match: UB2V1_MOUSE (Ubiquitin-conjugating enzyme E2 variant 1 OS=Mus musculus GN=Ube2v1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.585e-21
Identity = 43/86 (50.00%), Postives = 61/86 (70.93%), Query Frame = 2
Query:   29 PRSFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVTQDS 286
            PR+FR       G+KG+GDGTVS+G++D +D+ +  WTG +IGP  T++E RIY LK+ C   YPE PPSVRF +R+NM+ V+  +
Sbjct:   12 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPSVRFVTRVNMSGVSSSN 97          
BLAST of EL492457 vs. ExPASy Swiss-Prot
Match: UB2V2_RAT (Ubiquitin-conjugating enzyme E2 variant 2 OS=Rattus norvegicus GN=Ube2v2 PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 1.341e-20
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 2
Query:   29 PRSFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVTQDS 286
            PR+FR       G+KG+GDGTVS+G++D +D+ +  WTG +IGP  T +E RIY LK+ C   YPE PPSVRF ++INM  +   S
Sbjct:   10 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGSKYPEAPPSVRFVTKINMNGINNSS 95          
BLAST of EL492457 vs. ExPASy Swiss-Prot
Match: UB2V2_MOUSE (Ubiquitin-conjugating enzyme E2 variant 2 OS=Mus musculus GN=Ube2v2 PE=2 SV=4)

HSP 1 Score: 98.2117 bits (243), Expect = 1.341e-20
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 2
Query:   29 PRSFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVTQDS 286
            PR+FR       G+KG+GDGTVS+G++D +D+ +  WTG +IGP  T +E RIY LK+ C   YPE PPSVRF ++INM  +   S
Sbjct:   10 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGSKYPEAPPSVRFVTKINMNGINNSS 95          
BLAST of EL492457 vs. ExPASy Swiss-Prot
Match: UB2V2_PONAB (Ubiquitin-conjugating enzyme E2 variant 2 OS=Pongo abelii GN=UBE2V2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.752e-20
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 2
Query:   29 PRSFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVTQDS 286
            PR+FR       G+KG+GDGTVS+G++D +D+ +  WTG +IGP  T +E RIY LK+ C   YPE PPSVRF ++INM  +   S
Sbjct:   10 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSS 95          
BLAST of EL492457 vs. ExPASy Swiss-Prot
Match: UB2V2_HUMAN (Ubiquitin-conjugating enzyme E2 variant 2 OS=Homo sapiens GN=UBE2V2 PE=1 SV=4)

HSP 1 Score: 97.8265 bits (242), Expect = 1.752e-20
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 2
Query:   29 PRSFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTVIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVTQDS 286
            PR+FR       G+KG+GDGTVS+G++D +D+ +  WTG +IGP  T +E RIY LK+ C   YPE PPSVRF ++INM  +   S
Sbjct:   10 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSS 95          
The following BLAST results are available for this feature:
BLAST of EL492457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
UEV1C_ARATH5.239e-4186.05Ubiquitin-conjugating enzyme E2 variant 1C OS=Arab... [more]
UEV1D_ARATH7.565e-4082.56Ubiquitin-conjugating enzyme E2 variant 1D OS=Arab... [more]
UEV1B_ARATH3.078e-3370.93Ubiquitin-conjugating enzyme E2 variant 1B OS=Arab... [more]
UEV1A_ARATH3.404e-3268.60Ubiquitin-conjugating enzyme E2 variant 1A OS=Arab... [more]
UBE2V_DICDI5.819e-2454.65Probable ubiquitin-conjugating enzyme E2 variant O... [more]
UB2V1_MOUSE1.585e-2150.00Ubiquitin-conjugating enzyme E2 variant 1 OS=Mus m... [more]
UB2V2_RAT1.341e-2050.00Ubiquitin-conjugating enzyme E2 variant 2 OS=Rattu... [more]
UB2V2_MOUSE1.341e-2050.00Ubiquitin-conjugating enzyme E2 variant 2 OS=Mus m... [more]
UB2V2_PONAB1.752e-2050.00Ubiquitin-conjugating enzyme E2 variant 2 OS=Pongo... [more]
UB2V2_HUMAN1.752e-2050.00Ubiquitin-conjugating enzyme E2 variant 2 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionC0672 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC0672, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492457 ID=EL492457; Name=EL492457; organism=Citrus sinensis; type=EST; length=287bp
GACTGCGTAGTGATCCAGTGTCGTGGTCCCTCGGAGCTTCAGATTGTTGG
AGGAACTTGAACGCGGAGAAAAAGGTATTGGAGATGGCACTGTCAGCTAT
GGAATGGATGATGGAGATGACATTTACATGCGCTCTTGGACTGGCACCGT
TATCGGTCCTCACAATACTGTACATGAAGGTAGAATTTATCAGTTGAAGC
TGTTCTGTGATAAAGATTATCCAGAGAAGCCACCAAGTGTTCGTTTTCAT
TCACGAATCAACATGACTTGTGTTACTCAGGACTCAT
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