CV886737

Overview
NameCV886737
Unique NameCV886737
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV886737 vs. ExPASy Swiss-Prot
Match: ATP7_ARATH (Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At2g21870 PE=1 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 1.212e-92
Identity = 172/240 (71.67%), Postives = 202/240 (84.17%), Query Frame = 2 
Query:  110 MAFASRLASKSKQLCSSQVILQRQHAISVRFFANEAAPQALKGDEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALDKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL 829
            MA+ASR  S+SKQL    VILQ+QHAI VR FA EAA    KGDEMLK +F D+K KF+ A+ +LRKEKIT+ PEDPAAV QYANVMKT+R+KAD+FSESQRI + I+T T  IPDAR YLL L+EIR RRGL DE GAEAMM +AL+KVEK+IKKPL+R+DKKGM LL AEF+K NKKLGIRKEDLPKYEE LEL +AKAQL+ELK DA+EAME+QKK+EEF+DEEM +VKSLD+RNF+
Sbjct:    1 MAYASRFLSRSKQLQGGLVILQQQHAIPVRAFAKEAARPTFKGDEMLKGVFFDIKNKFQAAVDILRKEKITLDPEDPAAVKQYANVMKTIRQKADMFSESQRIKHDIDTETQDIPDARAYLLKLQEIRTRRGLTDELGAEAMMFEALEKVEKDIKKPLLRSDKKGMDLLVAEFEKGNKKLGIRKEDLPKYEENLELSMAKAQLDELKSDAVEAMESQKKKEEFQDEEMPDVKSLDIRNFI 240
The following BLAST results are available for this feature:
BLAST of CV886737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATP7_ARATH1.212e-9271.67Probable ATP synthase 24 kDa subunit, mitochondria... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_024H08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_024_T3_H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886737 ID=CV886737; Name=CV886737; organism=Citrus sinensis; type=EST; length=851bp
GTCTCCTCACCTCAAAGGCTCAAAAATCAGAATCCCAAACGAACCCTAAA
CACGCTAAAAGCAGAAACCTCCAAGAAGAAGAACAACAGCTGAGGTTCTG
ATTCCGATCATGGCATTTGCTTCTCGCCTCGCATCCAAATCCAAACAGCT
GTGTAGTAGCCAAGTGATACTGCAACGGCAGCATGCAATTTCAGTTCGTT
TCTTTGCAAACGAAGCTGCTCCTCAGGCTCTTAAAGGAGATGAGATGTTG
AAAAACATCTTTTTGGATGTTAAGAAGAAATTTGAGACTGCCTTGGGGGT
ACTCCGGAAGGAGAAGATCACCATTGCTCCAGAGGATCCTGCTGCTGTTT
CTCAGTATGCTAATGTCATGAAGACTGTCAGAGAGAAGGCAGACTTGTTC
TCAGAATCCCAACGAATAGCGTATACCATTGAAACACGAACAGCAGGAAT
TCCAGATGCTCGAACATATTTGTTGACGCTCAAGGAAATAAGGGAGAGGA
GAGGTCTCATTGATGAGCATGGTGCTGAGGCTATGATGATGGATGCATTG
GATAAAGTTGAAAAAGAAATTAAAAAGCCTCTTATGAGGAATGATAAGAA
GGGGATGGCTCTTCTTACAGCTGAGTTTGACAAGATTAATAAGAAGCTTG
GGATCCGAAAGGAGGATCTACCAAAGTATGAAGAACAGTTGGAACTCAAA
ATTGCCAAAGCACAGTTGGAAGAATTGAAGAAGGATGCTCTTGAGGCCAT
GGAAACACAAAAGAAGAGAGAGGAATTCAAGGATGAAGAAATGGTCGAAG
TGAAGTCCTTGGATGTCAGAAACTTCCTTTGAGTCTCTGCATTTACTTTT
T
back to top