CV886720

Overview
NameCV886720
Unique NameCV886720
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length508
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886720 vs. ExPASy Swiss-Prot
Match: BGAL8_ARATH (Beta-galactosidase 8 OS=Arabidopsis thaliana GN=BGAL8 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 4.899e-31
Identity = 64/100 (64.00%), Postives = 81/100 (81.00%), Query Frame = -3
Query:  213 VDMWGSDSKI--QRKPGPVLSLECPNPNQVISSIKFASFGTPLGTCGSFSRGRCSSARSLSVVRQACVGSKSCIIGVSVNTFGDPCKGVMKSLAVEASCT 506
            VD W SDSKI  + +  PVLSL+CP   QVI SIKFASFGTP GTCGSF++G C+S+RSLS+V++AC+G +SC + VS   FG+PC+GV+KSLAVEASC+
Sbjct:  753 VDTWTSDSKISNRNRTRPVLSLKCPISTQVIFSIKFASFGTPKGTCGSFTQGHCNSSRSLSLVQKACIGLRSCNVEVSTRVFGEPCRGVVKSLAVEASCS 852          
BLAST of CV886720 vs. ExPASy Swiss-Prot
Match: BGAL6_ORYSJ (Beta-galactosidase 6 OS=Oryza sativa subsp. japonica GN=Os03g0255100 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.021e-28
Identity = 56/98 (57.14%), Postives = 73/98 (74.49%), Query Frame = -3
Query:  213 VDMWGSDSKIQRKPGPVLSLECPNPNQVISSIKFASFGTPLGTCGSFSRGRCSSARSLSVVRQACVGSKSCIIGVSVNTFGDPCKGVMKSLAVEASCT 506
            +D W S  +  +  GP L LECP   QVIS+IKFASFGTP GTCG+++ G CSS+++L+VV++ACVG  +C + VS N FGDPC GV KSL VEA+C+
Sbjct:  761 IDSWISPQQTSQTQGPALRLECPREGQVISNIKFASFGTPSGTCGNYNHGECSSSQALAVVQEACVGMTNCSVPVSSNNFGDPCSGVTKSLVVEAACS 858          
BLAST of CV886720 vs. ExPASy Swiss-Prot
Match: BGA15_ORYSJ (Beta-galactosidase 15 OS=Oryza sativa subsp. japonica GN=Os12g0429200 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.302e-19
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = -3
Query:  213 PVLSLECPNPNQVISSIKFASFGTPLGTCGSFSRGRCSSARSLSVVRQACVGSKSCIIGVSVNTFGDPCKGVMKSLAVEASCT 461
            P L L+C +   VIS I FAS+GTP G C +FS+G C ++ +L +V +ACVG+  C I VS + FGDPC+GV+K LAVEA C+
Sbjct:  826 PELRLQCDD-GHVISEITFASYGTPSGGCLNFSKGNCHASSTLDLVTEACVGNTKCAISVSNDVFGDPCRGVLKDLAVEAKCS 907          
BLAST of CV886720 vs. ExPASy Swiss-Prot
Match: BGAL5_ORYSJ (Beta-galactosidase 5 OS=Oryza sativa subsp. japonica GN=Os03g0165400 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.583e-19
Identity = 44/80 (55.00%), Postives = 58/80 (72.50%), Query Frame = -3
Query:  213 LECPNPNQVISSIKFASFGTPLGTCGSFSRGRCSSARSLSVVRQACVGSKSCIIGVSVNTF-GDPCKGVMKSLAVEASCT 449
            L+C  P Q IS+IKFASFGTPLGTCG+F +G C S  S SV+ + C+G + C++ +S + F GDPC  VMK +AVEA C+
Sbjct:  760 LKCA-PGQTISAIKFASFGTPLGTCGTFQQGECHSINSNSVLEKKCIGLQRCVVAISPSNFGGDPCPEVMKRVAVEAVCS 838          
BLAST of CV886720 vs. ExPASy Swiss-Prot
Match: BGAL3_ARATH (Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BGAL3 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.635e-18
Identity = 45/98 (45.92%), Postives = 63/98 (64.29%), Query Frame = -3
Query:  216 VDMWGSDSKIQRKPGPVLSLECPNPNQVISSIKFASFGTPLGTCGSFSRGRCSSARSLSVVRQACVGSKSCIIGVSVNTFG-DPCKGVMKSLAVEASC 506
            ++ +G      R   P + L+C +P Q I+SIKFASFGTPLGTCGS+ +G C +A S +++ + CVG   C + +S + FG DPC  V+K L VEA C
Sbjct:  752 IESYGKGQTFHR---PKVHLKC-SPGQAIASIKFASFGTPLGTCGSYQQGECHAATSYAILERKCVGKARCAVTISNSNFGKDPCPNVLKRLTVEAVC 845          
BLAST of CV886720 vs. ExPASy Swiss-Prot
Match: BGAL_SOLLC (Beta-galactosidase OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.060e-17
Identity = 45/91 (49.45%), Postives = 58/91 (63.74%), Query Frame = -3
Query:  213 KIQRKPGPVLSLECPNPNQVISSIKFASFGTPLGTCGSFSRGRCSSARSLSVVRQACVGSKSCIIGVSVNTF-GDPCKGVMKSLAVEASCT 482
            K  R   P   L+C  P Q ISSIKFASFGTP G CG+F +G C + RS    ++ CVG +SC + V+   F GDPC+ V+K L+VEA C+
Sbjct:  746 KFDRPLRPKAHLKCA-PGQKISSIKFASFGTPEGVCGNFQQGSCHAPRSYDAFKKNCVGKESCSVQVTPENFGGDPCRNVLKKLSVEAICS 835          
BLAST of CV886720 vs. ExPASy Swiss-Prot
Match: BGAL_ASPOF (Beta-galactosidase OS=Asparagus officinalis PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.408e-16
Identity = 45/88 (51.14%), Postives = 54/88 (61.36%), Query Frame = -3
Query:  216 PVLSLECPNPNQVISSIKFASFGTPLGTCGSFSRGRCSSARSLSV-----VRQACVGSKSCIIGVSVNTF-GDPCKGVMKSLAVEASC 461
            P + L C +P Q +S IKFASFGTP GTCGSFS G C + +S        + Q CVG + C + V+   F GDPC G MK LAVEA C
Sbjct:  745 PKVHLSC-DPGQKMSKIKFASFGTPQGTCGSFSEGSCHAHKSYDAFEQEGLMQNCVGQEFCSVNVAPEVFGGDPCPGTMKKLAVEAIC 831          
BLAST of CV886720 vs. ExPASy Swiss-Prot
Match: BGAL9_ARATH (Beta-galactosidase 9 OS=Arabidopsis thaliana GN=BGAL9 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.451e-16
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = -3
Query:  213 PVLSLECPNPNQVISSIKFASFGTPLGTCGSFSRGRCSSARSLSVVRQACVGSKSCIIGVSVNTF-GDPCKGVMKSLAVEASCT 461
            P + L C +   VISSI+FAS+GTP G+C  FS G+C ++ SLS+V +AC G  SC I VS   F  DPC G +K+LAV + C+
Sbjct:  795 PEVHLHCED-GHVISSIEFASYGTPRGSCDGFSIGKCHASNSLSIVSEACKGRNSCFIEVSNTAFISDPCSGTLKTLAVMSRCS 877          
BLAST of CV886720 vs. ExPASy Swiss-Prot
Match: BGAL1_ARATH (Beta-galactosidase 1 OS=Arabidopsis thaliana GN=BGAL1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.451e-16
Identity = 42/93 (45.16%), Postives = 55/93 (59.14%), Query Frame = -3
Query:  216 SDSKIQRKPGPVLSLECPNPNQVISSIKFASFGTPLGTCGSFSRGRCSSARSLSVVRQACVGSKSCIIGVSVNTF-GDPCKGVMKSLAVEASC 491
            +  K+ +   P   L+C  P Q I+++KFASFGTP GTCGS+ +G C +  S     + CVG   C + V+   F GDPC  VMK LAVEA C
Sbjct:  755 ASGKVNKPLHPKAHLQC-GPGQKITTVKFASFGTPEGTCGSYRQGSCHAHHSYDAFNKLCVGQNWCSVTVAPEMFGGDPCPNVMKKLAVEAVC 846          
BLAST of CV886720 vs. ExPASy Swiss-Prot
Match: BGAL3_ORYSJ (Beta-galactosidase 3 OS=Oryza sativa subsp. japonica GN=Os01g0875500 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.768e-15
Identity = 39/99 (39.39%), Postives = 58/99 (58.59%), Query Frame = -3
Query:  213 VDMWGSDSKIQRKPGPVLSLECPNPNQVISSIKFASFGTPLGTCGSFSRGRCSSARSLSVVRQACVGSKSCIIGVSVNTFG-DPCKGVMKSLAVEASCT 506
            ++ W  +++   +    + L CP   + ISS+KF SFG P GTC S+ +G C    S+SVV +AC+    C + +S   FG D C GV K+LA+EA C+
Sbjct:  754 LESWDRNTQNDGRDAAKVQLSCPK-GKSISSVKFVSFGNPSGTCRSYQQGSCHHPNSISVVEKACLNMNGCTVSLSDEGFGEDLCPGVTKTLAIEADCS 851          
The following BLAST results are available for this feature:
BLAST of CV886720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
BGAL8_ARATH4.899e-3164.00Beta-galactosidase 8 OS=Arabidopsis thaliana GN=BG... [more]
BGAL6_ORYSJ1.021e-2857.14Beta-galactosidase 6 OS=Oryza sativa subsp. japoni... [more]
BGA15_ORYSJ4.302e-1953.01Beta-galactosidase 15 OS=Oryza sativa subsp. japon... [more]
BGAL5_ORYSJ9.583e-1955.00Beta-galactosidase 5 OS=Oryza sativa subsp. japoni... [more]
BGAL3_ARATH1.635e-1845.92Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BG... [more]
BGAL_SOLLC1.060e-1749.45Beta-galactosidase OS=Solanum lycopersicum PE=1 SV... [more]
BGAL_ASPOF3.408e-1651.14Beta-galactosidase OS=Asparagus officinalis PE=2 S... [more]
BGAL9_ARATH4.451e-1650.00Beta-galactosidase 9 OS=Arabidopsis thaliana GN=BG... [more]
BGAL1_ARATH4.451e-1645.16Beta-galactosidase 1 OS=Arabidopsis thaliana GN=BG... [more]
BGAL3_ORYSJ3.768e-1539.39Beta-galactosidase 3 OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_024G11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_024_T7_G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886720 ID=CV886720; Name=CV886720; organism=Citrus sinensis; type=EST; length=508bp
TTTTTTTTTTTTTCTGAAACAATATGATTATTATTTTCAATAAAATACAC
CTTACGGTGATAGTGTGATATTCCTTCTCCTTTTTTTTTGGGGGTTAAAA
TGTACATTTTACGTTGCAAGCATTACAATTCTTATTCGAACTTGACACTT
AATTGGGGGATCAATTGCCTAATAGCCCACAAAAAGTGAATGCTTAGAGC
TCCGTCTCTTCAGGTACAGGAAGCTTCAACCGCTAAACTCTTCATTACTC
CTTTACATGGGTCACCAAACGTATTAACAGATACTCCTATGATACAACTT
TTGGATCCAACACAAGCCTGCCGTACAACGGAAAGAGACCTTGCACTACT
GCATCGTCCACGGCTGAAACTCCCACAAGTGCCGAGAGGAGTTCCAAAAC
TTGCAAATTTGATTGAAGAAATGACCTGATTAGGATTCGGGCACTCGAGT
GAGAGTACTGGCCCTGGTTTTCTTTGAATTTTTGAATCTGACCCCCACAT
ATCTACCT
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