EY665579 | Citrus Genome Database

Overview


Name	EY665579
Unique Name	EY665579
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	826

Libraries


Library Name	Type
Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY665579 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.290e-31
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 2

Query:  257 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 400
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 58.9214 bits (141), Expect = 2.290e-31
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 3

Query:  402 QLEDGRTLADYNIQKESTLHLVLRLRGG 485
            QLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   49 QLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 90.8929 bits (224), Expect = 9.432e-18
Identity = 47/59 (79.66%), Postives = 47/59 (79.66%), Query Frame = 2

Query:   80 EXXXXIXNVXRKIXDKEGXXXDPQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 256
            E    I NV  KI DKEG   D QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   18 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY665579 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.290e-31
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 2

Query:  257 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 400
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 58.9214 bits (141), Expect = 2.290e-31
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 3

Query:  402 QLEDGRTLADYNIQKESTLHLVLRLRGG 485
            QLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   49 QLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 90.8929 bits (224), Expect = 9.432e-18
Identity = 47/59 (79.66%), Postives = 47/59 (79.66%), Query Frame = 2

Query:   80 EXXXXIXNVXRKIXDKEGXXXDPQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 256
            E    I NV  KI DKEG   D QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   18 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY665579 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.290e-31
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 2

Query:  257 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 400
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 58.9214 bits (141), Expect = 2.290e-31
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 3

Query:  402 QLEDGRTLADYNIQKESTLHLVLRLRGG 485
            QLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   49 QLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 90.8929 bits (224), Expect = 9.432e-18
Identity = 47/59 (79.66%), Postives = 47/59 (79.66%), Query Frame = 2

Query:   80 EXXXXIXNVXRKIXDKEGXXXDPQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 256
            E    I NV  KI DKEG   D QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   18 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY665579 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.290e-31
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 2

Query:  257 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 400
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 58.9214 bits (141), Expect = 2.290e-31
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 3

Query:  402 QLEDGRTLADYNIQKESTLHLVLRLRGG 485
            QLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   49 QLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 90.8929 bits (224), Expect = 9.432e-18
Identity = 47/59 (79.66%), Postives = 47/59 (79.66%), Query Frame = 2

Query:   80 EXXXXIXNVXRKIXDKEGXXXDPQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 256
            E    I NV  KI DKEG   D QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   18 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY665579 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.290e-31
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 2

Query:  257 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 400
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 58.9214 bits (141), Expect = 2.290e-31
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 3

Query:  402 QLEDGRTLADYNIQKESTLHLVLRLRGG 485
            QLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   49 QLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 90.8929 bits (224), Expect = 9.432e-18
Identity = 47/59 (79.66%), Postives = 47/59 (79.66%), Query Frame = 2

Query:   80 EXXXXIXNVXRKIXDKEGXXXDPQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 256
            E    I NV  KI DKEG   D QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   18 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY665579 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.290e-31
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 2

Query:  257 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 400
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 58.9214 bits (141), Expect = 2.290e-31
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 3

Query:  402 QLEDGRTLADYNIQKESTLHLVLRLRGG 485
            QLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   49 QLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 90.8929 bits (224), Expect = 9.432e-18
Identity = 47/59 (79.66%), Postives = 47/59 (79.66%), Query Frame = 2

Query:   80 EXXXXIXNVXRKIXDKEGXXXDPQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 256
            E    I NV  KI DKEG   D QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   18 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY665579 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.290e-31
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 2

Query:  257 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 400
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 58.9214 bits (141), Expect = 2.290e-31
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 3

Query:  402 QLEDGRTLADYNIQKESTLHLVLRLRGG 485
            QLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   49 QLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 90.8929 bits (224), Expect = 9.432e-18
Identity = 47/59 (79.66%), Postives = 47/59 (79.66%), Query Frame = 2

Query:   80 EXXXXIXNVXRKIXDKEGXXXDPQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 256
            E    I NV  KI DKEG   D QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   18 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY665579 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.290e-31
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 2

Query:  257 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 400
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 58.9214 bits (141), Expect = 2.290e-31
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 3

Query:  402 QLEDGRTLADYNIQKESTLHLVLRLRGG 485
            QLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   49 QLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 90.8929 bits (224), Expect = 9.432e-18
Identity = 47/59 (79.66%), Postives = 47/59 (79.66%), Query Frame = 2

Query:   80 EXXXXIXNVXRKIXDKEGXXXDPQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 256
            E    I NV  KI DKEG   D QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   18 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY665579 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.290e-31
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 2

Query:  257 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 400
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 58.9214 bits (141), Expect = 2.290e-31
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 3

Query:  402 QLEDGRTLADYNIQKESTLHLVLRLRGG 485
            QLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   49 QLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 90.8929 bits (224), Expect = 9.432e-18
Identity = 47/59 (79.66%), Postives = 47/59 (79.66%), Query Frame = 2

Query:   80 EXXXXIXNVXRKIXDKEGXXXDPQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 256
            E    I NV  KI DKEG   D QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   18 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of EY665579 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.290e-31
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 2

Query:  257 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 400
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

HSP 2 Score: 58.9214 bits (141), Expect = 2.290e-31
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 3

Query:  402 QLEDGRTLADYNIQKESTLHLVLRLRGG 485
            QLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   49 QLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 3 Score: 90.8929 bits (224), Expect = 9.432e-18
Identity = 47/59 (79.66%), Postives = 47/59 (79.66%), Query Frame = 2

Query:   80 EXXXXIXNVXRKIXDKEGXXXDPQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 256
            E    I NV  KI DKEG   D QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   18 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of EY665579 vs. ExPASy Swiss-Prot

BLAST of EY665579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92


Match Name	E-value	Identity	Description
UBIQ_WHEAT	2.290e-31	100.00	Ubiquitin OS=Triticum aestivum PE=3 SV=1	[more]
UBIQ_SOYBN	2.290e-31	100.00	Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1	[more]
UBIQ_SOLTU	2.290e-31	100.00	Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1	[more]
UBIQ_SOLLC	2.290e-31	100.00	Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=...	[more]
UBIQ_PETCR	2.290e-31	100.00	Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3...	[more]
UBIQ_PEA	2.290e-31	100.00	Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1	[more]
UBIQ_ORYSJ	2.290e-31	100.00	Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ...	[more]
UBIQ_NICSY	2.290e-31	100.00	Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE...	[more]
UBIQ_MAIZE	2.290e-31	100.00	Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1	[more]
UBIQ_LUPPO	2.290e-31	100.00	Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-102-070-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY665579 ID=EY665579; Name=EY665579; organism=Citrus sinensis; type=EST; length=826bp
CACGCGTCCGCCGTCTCCGTGGTGGCCCCCCTTATTAAGGAAAAGACCCT
CACTGGAAAGACTATCGCCCCCCTTTGAGGAAAGNTNNGANANNATTGAN
AATGTNNAAAGGAAAATTNAGGATAAGGAAGGGATNNNANNAGACCCCCA
AAGGCTCATCTTTGCTGGTAAACAACTAGAGGATGGACGCACACTTGCAG
ACTACAACATCCAGAAGGAATCAACCCTTCATTTGGTCCTCCGTCTCAGG
GGTGGCATGCAGATTTTTGTGAAAACCCTGACCGGTAAGACTATAACTTT
GGAGGTTGAAAGCTCTGACACGATCGACAATGTCAAGGCCAAGATCCAGG
ACAAGGAGGGCATCCCACCTGATCAACAGAGGTTAATCTTTGCCGGCAAA
CCAACTTGAAGATGGTCGTACTCTTGCTGACTACAACATCCAGAAGGAGT
CAACCCTCCATTTGGTGCTTCGTCTCCGGGGTGGCATGCAAATCTTTGTG
AAAACCCTCACCGGAAAAACAATTACTCTTGAGGTTGAAAGTTCTGACAC
ATTGACAACGTGAAACCCAAAATTCAAGACCAGAAGGGAATCCCCACAGA
ACAGCAAAGGTTCCTTTTTGCCTGGAAAGCAACTTTGAAATGGAAGGACT
TTTGCAAAATAATACATCACAAAGAATCAATCCTTCACTGGGTTCTTCGC
CTCACTGGGGGGAATCACAGATTTTTTTGGACACCACCTCATTGGAAACA
ACCATAGGTGGGGGACGCTCCAAGACGGAGACCCCTACCGACAAAGCACG
ACGTAGCACCCAAACAACCGGCGCGA