EY665575

Overview
NameEY665575
Unique NameEY665575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length381
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665575 vs. ExPASy Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.778e-36
Identity = 70/82 (85.37%), Postives = 79/82 (96.34%), Query Frame = 1
Query:    1 GRPIFAFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 246
            G P+F FTK+NELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG+PINEIEPL+LFN++FFFVAA+NPGTGKFVTDE+EE
Sbjct:  193 GGPLFEFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIVFFFVAAINPGTGKFVTDEEEE 274          

HSP 2 Score: 88.5817 bits (218), Expect = 1.087e-17
Identity = 45/74 (60.81%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   19 FTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALN--PGTGKFVTD 234
            FTK NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI E EPL+LF ++F  + A+      GKF+ D
Sbjct:   93 FTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDD 166          
BLAST of EY665575 vs. ExPASy Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.576e-35
Identity = 69/80 (86.25%), Postives = 77/80 (96.25%), Query Frame = 1
Query:    7 PIFAFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 246
            P+F FTKSNELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG+PINEIEPLVL NV+FFF+AA+NPGTGKF+TD++EE
Sbjct:  194 PLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAINPGTGKFITDDEEE 273          

HSP 2 Score: 84.3445 bits (207), Expect = 2.050e-16
Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   19 FTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 234
            FTK NELFVGR+A +G A SL+GE ITGKG L+QLN+ETGIPI E EPL+LF ++F  + A+      G+FV +
Sbjct:   94 FTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDE 167          
BLAST of EY665575 vs. ExPASy Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.669e-34
Identity = 67/82 (81.71%), Postives = 77/82 (93.90%), Query Frame = 1
Query:    1 GRPIFAFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 246
            G P+F FTK+NELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG+PINEIEPL+LFN+ FFF AA+NPGTGKF+TDE+E+
Sbjct:  195 GGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276          

HSP 2 Score: 87.4261 bits (215), Expect = 2.422e-17
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   19 FTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 234
            FTK NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI E EPL+LF ++F  + A+      G+F+ D
Sbjct:   95 FTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDD 168          
BLAST of EY665575 vs. ExPASy Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.669e-34
Identity = 67/82 (81.71%), Postives = 77/82 (93.90%), Query Frame = 1
Query:    1 GRPIFAFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 246
            G P+F FTK+NELFVGRLAQLGIAFS+IGEIITGKGALAQLN ETG+PINEIEPL+LFN+ FFF AA+NPGTGKF+TDE+E+
Sbjct:  195 GGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276          

HSP 2 Score: 88.9669 bits (219), Expect = 8.324e-18
Identity = 46/74 (62.16%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   19 FTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 234
            FTK NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI E EPL+LF ++F  + A+      GKFV D
Sbjct:   95 FTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDD 168          
BLAST of EY665575 vs. ExPASy Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.196e-32
Identity = 67/80 (83.75%), Postives = 73/80 (91.25%), Query Frame = 1
Query:    7 PIFAFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 246
            P+F FTK+NELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPI +IEPLVL NV FFF AA+NPG GKF+TD+ EE
Sbjct:  185 PLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNVAFFFFAAINPGNGKFITDDGEE 264          

HSP 2 Score: 88.9669 bits (219), Expect = 8.324e-18
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 1
Query:   19 FTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNP--GTGKFVTD 234
            FTK+NELFVGR+A +G A SL+GE +TGKG LAQLN+ETGIPI E EPL+LF ++F  + A+      GKFV D
Sbjct:   85 FTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDD 158          
The following BLAST results are available for this feature:
BLAST of EY665575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBS_TOBAC6.778e-3685.37Photosystem II 22 kDa protein, chloroplastic OS=Ni... [more]
PSBS_SPIOL2.576e-3586.25Photosystem II 22 kDa protein, chloroplastic OS=Sp... [more]
PSBS_SOLSG1.669e-3481.71Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_SOLLC1.669e-3481.71Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_ARATH1.196e-3283.75Photosystem II 22 kDa protein, chloroplastic OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-070-B08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665575 ID=EY665575; Name=EY665575; organism=Citrus sinensis; type=EST; length=381bp
GGAAGGCCCATATTTGCATTCACGAAGTCAAACGAGCTGTTTGTGGGAAG
ATTGGCTCAGTTGGGTATTGCATTCTCTTTGATTGGAGAAATCATAACAG
GGAAAGGAGCTCTAGCACAACTCAACATTGAGACTGGGATCCCCATCAAC
GAAATCGAACCACTTGTGCTGTTCAACGTTATCTTCTTCTTTGTTGCCGC
ATTGAATCCTGGAACTGGTAAATTTGTCACAGATGAAGATGAGGAGTAGA
TGAAACGTGGAAGCTGTTCCTGTTTACTTTATTATGATAAACTTGAATTT
CCATTCAATGTAAAAGATAATATTTTGTCGTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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