EY665566

Overview
NameEY665566
Unique NameEY665566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10024 contig Csv1_Contig10024:113..865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665566 vs. ExPASy Swiss-Prot
Match: GCSPA_FLAPR (Glycine dehydrogenase [decarboxylating] A, mitochondrial OS=Flaveria pringlei GN=GDCSPA PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.323e-39
Identity = 96/160 (60.00%), Postives = 112/160 (70.00%), Query Frame = 3
Query:  198 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSN-NSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEGSSQMSELVGLDNLDSLIDATVPKSIRIDFMKFSKFDEG*PESQMIEHMQN 674
            MERARRLA++A L RLV+++K     H  S          +PSRY+SSLS  P+VCS  N RSD          N+NG+G  SQ R ISVEALKPSDTF RRHNSATPE  ++M+E VG  NLDSLIDATVPKSIR+D MK+SKFDEG  ESQMI HMQ+
Sbjct:    1 MERARRLANKAILGRLVSQTK-----HNPS---ISSPALCSPSRYVSSLS--PYVCSGTNVRSD---------RNLNGFG--SQVRTISVEALKPSDTFPRRHNSATPEEQTKMAEFVGFPNLDSLIDATVPKSIRLDSMKYSKFDEGLTESQMIAHMQD 139          

HSP 2 Score: 26.1794 bits (56), Expect = 4.323e-39
Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  709 GMGYYNTHVPPGIL 750
            GMGYYNT VP  IL
Sbjct:  152 GMGYYNTSVPTVIL 165          
BLAST of EY665566 vs. ExPASy Swiss-Prot
Match: GCSP_SOLTU (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Solanum tuberosum GN=GDCSP PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.975e-37
Identity = 87/159 (54.72%), Postives = 101/159 (63.52%), Query Frame = 3
Query:  198 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSNNSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEGSSQMSELVGLDNLDSLIDATVPKSIRIDFMKFSKFDEG*PESQMIEHMQN 674
            MERAR+LA+RA LKRLV++SKQ   N   S         Y PSRY+SSLS   F   NN++S   Q                Q R ISVEALKPSDTF RRHNSATPE  ++M+E  G  +LD+LIDATVP+SIR + MK  KFD G  ESQMIEHMQN
Sbjct:    1 MERARKLANRAILKRLVSQSKQSRSNEIPSSSL------YRPSRYVSSLSPYTFQARNNAKSFNTQ----------------QARSISVEALKPSDTFPRRHNSATPEEQTKMAEFCGFQSLDALIDATVPQSIRSESMKLPKFDSGLTESQMIEHMQN 137          

HSP 2 Score: 30.4166 bits (67), Expect = 2.975e-37
Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 1
Query:  709 GMGYYNTHVPPGIL 750
            GMGYYNT+VPP IL
Sbjct:  150 GMGYYNTYVPPVIL 163          
BLAST of EY665566 vs. ExPASy Swiss-Prot
Match: GCSPB_FLAPR (Glycine dehydrogenase [decarboxylating] B, mitochondrial OS=Flaveria pringlei GN=GDCSPB PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.116e-36
Identity = 95/160 (59.38%), Postives = 109/160 (68.12%), Query Frame = 3
Query:  198 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSN-NSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEGSSQMSELVGLDNLDSLIDATVPKSIRIDFMKFSKFDEG*PESQMIEHMQN 674
            MERARRLA    L RLV+++K     H  S          +PSRY+SSLS  P+VCS  N RSD          N+NG+G  SQ R ISVEALKPSDTF RRHNSATPE  ++M+E VG  NLDSLIDATVPKSIR+D MK+SKFDEG  ESQMI HMQ+
Sbjct:    1 MERARRLA---ILGRLVSQTK-----HNPS---ISSPALCSPSRYVSSLS--PYVCSGTNVRSD---------RNLNGFG--SQVRTISVEALKPSDTFPRRHNSATPEEQTKMAEFVGFPNLDSLIDATVPKSIRLDSMKYSKFDEGLTESQMIAHMQD 136          

HSP 2 Score: 26.1794 bits (56), Expect = 1.116e-36
Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  709 GMGYYNTHVPPGIL 750
            GMGYYNT VP  IL
Sbjct:  149 GMGYYNTSVPTVIL 162          
BLAST of EY665566 vs. ExPASy Swiss-Prot
Match: GCSP1_ARATH (Glycine dehydrogenase [decarboxylating] 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSP PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.454e-36
Identity = 86/160 (53.75%), Postives = 102/160 (63.75%), Query Frame = 3
Query:  198 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSNNSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEGSSQMSELVGLDNLDSLIDATVPKSIRIDFMKFSK-FDEG*PESQMIEHMQN 674
            MERARRLA R  +KRLVNE+K+    HR  +       T TPSRY+SS+S       + S S    S    H          QTR ISV+ALKPSDTF RRHNSATP+  +QM+   G DNL++LID+TVPKSIR+D MKFS  FDEG  ESQMIEHM +
Sbjct:    1 MERARRLAYRGIVKRLVNETKR----HRNGESSLLPTTTVTPSRYVSSVSSFLHRRRDVSGSAFTTSGRNQH----------QTRSISVDALKPSDTFPRRHNSATPDEQAQMANYCGFDNLNTLIDSTVPKSIRLDSMKFSGIFDEGLTESQMIEHMSD 146          

HSP 2 Score: 32.7278 bits (73), Expect = 1.454e-36
Identity = 13/14 (92.86%), Postives = 13/14 (92.86%), Query Frame = 1
Query:  709 GMGYYNTHVPPGIL 750
            GMGYYNTHVPP IL
Sbjct:  159 GMGYYNTHVPPVIL 172          
BLAST of EY665566 vs. ExPASy Swiss-Prot
Match: GCSP_FLATR (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria trinervia GN=GDCSPA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.894e-36
Identity = 94/160 (58.75%), Postives = 109/160 (68.12%), Query Frame = 3
Query:  198 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSN-NSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEGSSQMSELVGLDNLDSLIDATVPKSIRIDFMKFSKFDEG*PESQMIEHMQN 674
            MERARRLA    L RLV+++K     H  S          +PSRY+SSLS  P+VCS  N RSD          N+NG+G  SQ R ISVEALKPSDTF RRHNSATPE  ++M+E VG  NLDSLIDATVPK+IR+D MK+SKFDEG  ESQMI HMQ+
Sbjct:    1 MERARRLA---MLGRLVSQTK-----HNPS---ISSSALCSPSRYVSSLS--PYVCSGTNVRSD---------RNLNGFG--SQVRTISVEALKPSDTFPRRHNSATPEEQTKMAEFVGFSNLDSLIDATVPKAIRLDSMKYSKFDEGLTESQMIAHMQD 136          

HSP 2 Score: 26.1794 bits (56), Expect = 1.894e-36
Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  709 GMGYYNTHVPPGIL 750
            GMGYYNT VP  IL
Sbjct:  149 GMGYYNTSVPTVIL 162          
BLAST of EY665566 vs. ExPASy Swiss-Prot
Match: GCSP_PEA (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Pisum sativum GN=GDCSP PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.466e-36
Identity = 87/166 (52.41%), Postives = 111/166 (66.87%), Query Frame = 3
Query:  198 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTP-------SRYLSSLSCAPFVCSNNSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEGSSQMSELVGLDNLDSLIDATVPKSIRIDFMKFSKFDEG*PESQMIEHMQN 674
            MERARRLA+RA LKRL++E+KQ    +R+++       T  P       SRY+SS+S +  +    S+ D   SR +      G G  SQ+R ISVEALKPSDTF RRHNSATP+  ++M+E VG D LDSL+DATVPKSIR+  MKF+KFD G  E QMIEHM++
Sbjct:    1 MERARRLANRATLKRLLSEAKQ----NRKTESTSTTTTTPLPFSLSGSSSRYVSSVSNS-ILRGRGSKPDNNVSRRVG--GFLGVGYPSQSRSISVEALKPSDTFPRRHNSATPDEQTKMAESVGFDTLDSLVDATVPKSIRLKEMKFNKFDGGLTEGQMIEHMKD 159          

HSP 2 Score: 32.7278 bits (73), Expect = 2.466e-36
Identity = 13/14 (92.86%), Postives = 13/14 (92.86%), Query Frame = 1
Query:  709 GMGYYNTHVPPGIL 750
            GMGYYNTHVPP IL
Sbjct:  172 GMGYYNTHVPPVIL 185          
BLAST of EY665566 vs. ExPASy Swiss-Prot
Match: GCSP_FLAAN (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria anomala GN=GDCSP PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.467e-36
Identity = 94/160 (58.75%), Postives = 108/160 (67.50%), Query Frame = 3
Query:  198 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSN-NSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEGSSQMSELVGLDNLDSLIDATVPKSIRIDFMKFSKFDEG*PESQMIEHMQN 674
            MERARRLA    L RLV+++K     H  S          +PSRY+SSLS  P+VC   N RSD          N+NG+G  SQ R ISVEALKPSDTF RRHNSATPE  ++M+E VG  NLDSLIDATVPKSIR+D MK+SKFDEG  ESQMI HMQ+
Sbjct:    1 MERARRLA---MLGRLVSQTK-----HNPS---ISSPALCSPSRYVSSLS--PYVCGGTNVRSD---------RNLNGFG--SQVRTISVEALKPSDTFPRRHNSATPEEQTKMAEFVGFSNLDSLIDATVPKSIRLDSMKYSKFDEGLTESQMIAHMQD 136          

HSP 2 Score: 26.1794 bits (56), Expect = 2.467e-36
Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  709 GMGYYNTHVPPGIL 750
            GMGYYNT VP  IL
Sbjct:  149 GMGYYNTSVPTVIL 162          
BLAST of EY665566 vs. ExPASy Swiss-Prot
Match: GCSP2_ARATH (Glycine dehydrogenase [decarboxylating] 2, mitochondrial OS=Arabidopsis thaliana GN=At4g33010 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.205e-35
Identity = 82/157 (52.23%), Postives = 107/157 (68.15%), Query Frame = 3
Query:  198 MERARRLASRAFLKRLVNESKQLSRNHRESKXXXXXXXTYTPSRYLSSLSCAPFVCSNNSRSDLLQSRNMSHHNVNGYGIGSQTRGISVEALKPSDTFARRHNSATPEGSSQMSELVGLDNLDSLIDATVPKSIRIDFMKFSKFDEG*PESQMIEHM 668
            MERARRLA R  +KRLVN++K+    HR ++        + P+RY+SSLS  PF+ +          R+++H     +G   QTR ISV+A+KPSDTF RRHNSATP+  + M++  G D++DSLIDATVPKSIR+D MKFSKFD G  ESQMI+HM
Sbjct:    1 MERARRLAYRGIVKRLVNDTKR----HRNAETPHLVP--HAPARYVSSLS--PFIST---------PRSVNH--TAAFGRHQQTRSISVDAVKPSDTFPRRHNSATPDEQTHMAKFCGFDHIDSLIDATVPKSIRLDSMKFSKFDAGLTESQMIQHM 138          

HSP 2 Score: 29.6462 bits (65), Expect = 1.205e-35
Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  709 GMGYYNTHVPPGIL 750
            GMGYYNTHVP  IL
Sbjct:  153 GMGYYNTHVPTVIL 166          
The following BLAST results are available for this feature:
BLAST of EY665566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
GCSPA_FLAPR4.323e-3960.00Glycine dehydrogenase [decarboxylating] A, mitocho... [more]
GCSP_SOLTU2.975e-3754.72Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSPB_FLAPR1.116e-3659.38Glycine dehydrogenase [decarboxylating] B, mitocho... [more]
GCSP1_ARATH1.454e-3653.75Glycine dehydrogenase [decarboxylating] 1, mitocho... [more]
GCSP_FLATR1.894e-3658.75Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_PEA2.466e-3652.41Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_FLAAN2.467e-3658.75Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP2_ARATH1.205e-3552.23Glycine dehydrogenase [decarboxylating] 2, mitocho... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-070-A09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665566 ID=EY665566; Name=EY665566; organism=Citrus sinensis; type=EST; length=751bp
TTATTTATCACCAACCCCCTACCTCCACTGACTCTTATGTAACAAAAATA
TTTACTTTATTGAAAAACTACTCTTTTTATCTTCTCAACAACCCCATTTG
CCTTGCTTTGCCTTGCTTCTTGTGAAGTTATTTCCTTTTTTGAAGTTTGC
AAGAGGCAAGACTCAAGAGCCCGTTTTAGCTCTATCTCACTTCATTCATG
GAGCGTGCAAGGCGGCTGGCCAGCCGGGCATTTCTCAAACGCCTGGTTAA
TGAGTCCAAGCAGCTGTCCCGCAATCACCGTGAATCAAAATCATCAGCTG
CCGCTGCTGCTACGTACACACCTTCAAGGTATCTCTCTTCATTGTCATGT
GCACCATTTGTTTGCTCCAACAATTCAAGATCAGATTTGTTGCAATCTAG
GAACATGTCTCATCATAATGTTAATGGTTATGGTATCGGGTCACAGACTC
GAGGCATTTCTGTTGAGGCATTAAAACCAAGTGATACTTTTGCTCGTCGC
CATAACTCTGCAACCCCAGAAGGATCAAGCCAAATGTCTGAGTTAGTTGG
TCTTGATAATCTCGATTCACTTATTGATGCTACTGTGCCTAAATCTATCC
GTATTGATTTCATGAAATTCTCTAAGTTTGATGAAGGGTAACCGGAGAGC
CAAATGATTGAACATATGCAGAACTAGCAATCATGAATAAGGGTTATAAG
TCATTTATGGCATGGGATACTATAACACTCATGTCCCCCCTGGGATTTTA
A
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