EL492439

Overview
NameEL492439
Unique NameEL492439
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length166
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12524 contig Csv1_Contig12524:324..489. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492439 vs. ExPASy Swiss-Prot
Match: PGIP_PYRCO (Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.411e-17
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = -1
Query:   14 YLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNL 166
            YLETL FHK P+LTGPIQPAIAKLK LK+LR+SWTN+SG VPDF+SQL NL
Sbjct:   95 YLETLEFHKQPNLTGPIQPAIAKLKGLKSLRLSWTNLSGSVPDFLSQLKNL 145          
BLAST of EL492439 vs. ExPASy Swiss-Prot
Match: PGIP1_ARATH (Polygalacturonase inhibitor 1 OS=Arabidopsis thaliana GN=PGIP1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.474e-16
Identity = 38/51 (74.51%), Postives = 45/51 (88.24%), Query Frame = -1
Query:   14 YLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNL 166
            YLETL+F KL +LTG IQP IAKLKNL+ LR+SWTN++GP+PDFISQL NL
Sbjct:   95 YLETLVFRKLSNLTGTIQPTIAKLKNLRMLRLSWTNLTGPIPDFISQLKNL 145          
BLAST of EL492439 vs. ExPASy Swiss-Prot
Match: PGIP2_ARATH (Polygalacturonase inhibitor 2 OS=Arabidopsis thaliana GN=PGIP2 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.244e-14
Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = -1
Query:   14 YLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNL 166
            YL +L+F KL +LTG IQP IAKLKNL  LR+SWTN++GPVP+F+SQL NL
Sbjct:   95 YLTSLIFRKLTNLTGHIQPTIAKLKNLTFLRLSWTNLTGPVPEFLSQLKNL 145          
BLAST of EL492439 vs. ExPASy Swiss-Prot
Match: PGIP_VITVI (Polygalacturonase inhibitor OS=Vitis vinifera GN=pgip PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.236e-13
Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = -1
Query:   14 YLETLMFHKLPSLTGPIQPAIAKLKNLKTLRISWTNISGPVPDFISQLTNL 166
            +LETL+F KL +LTG I PAIAKLK+LK +R+SWTN+SGPVP F S+L NL
Sbjct:   98 FLETLIFRKLSNLTGQIPPAIAKLKHLKMVRLSWTNLSGPVPAFFSELKNL 148          
The following BLAST results are available for this feature:
BLAST of EL492439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PGIP_PYRCO1.411e-1780.39Polygalacturonase inhibitor OS=Pyrus communis GN=P... [more]
PGIP1_ARATH3.474e-1674.51Polygalacturonase inhibitor 1 OS=Arabidopsis thali... [more]
PGIP2_ARATH7.244e-1468.63Polygalacturonase inhibitor 2 OS=Arabidopsis thali... [more]
PGIP_VITVI1.236e-1368.63Polygalacturonase inhibitor OS=Vitis vinifera GN=p... [more]
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Properties
Property NameValue
Genbank descriptionC0391 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC0391, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492439 ID=EL492439; Name=EL492439; organism=Citrus sinensis; type=EST; length=166bp
GATGAGTCCTGAGTAAGTTGGTGAGTTGGCTGATAAAATCAGGAACCGGC
CCAGAAATGTTTGTCCAGCTAATACGTAGCGTCTTCAGGTTTTTGAGCTT
GGCAATGGCGGGTTGTATGGGGCCAGTGAGGCTGGGTAGCTTGTGAAACA
TTAGGGTTTCCAGGTA
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