EY665563

Overview
NameEY665563
Unique NameEY665563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665563_ssr30 microsatellite EY665563_ssr30:30..41. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8012 contig Csv1_Contig8012:1..835. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665563 vs. ExPASy Swiss-Prot
Match: AP2_ARATH (Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.695e-28
Identity = 96/268 (35.82%), Postives = 117/268 (43.66%), Query Frame = 1
Query:   67 MWDLND----SLKDIEESEACSSQKTSIDGDDEKGKQXXXXXXXXXXXXXIENGSDEEIGASEXXXXXXXXXXKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLA--FPRANWVGVKFCQSEPIV--EAGK------SVIEAPQPLKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTXXXXXXXXXXXXIKVPGSGGRHKLQYRRL*G*LETDEQLYPRKSLYMDFADQAPGFPRGSSKYR 828
            MWDLND    + ++ E  E C S  +         K+             IE+GSD++                        E        P VT QFFP           ++  GG+A  FPRA+W GVKFCQS+      AGK      +V+E  QPLKK          QYRGVTFYRRTGRWESHIWD GKQVYLGGFDT            IK  G               L+    L   + +++    Q+ GFPRGSSKYR
Sbjct:    1 MWDLNDAPHQTQREEESEEFCYSSPS---------KRVGSFSNSSSSAVVIEDGSDDD------------------------ELNRVRPNNPLVTHQFFP---------EMDSNGGGVASGFPRAHWFGVKFCQSDLATGSSAGKATNVAAAVVEPAQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIDDYDDDLKQMTNLTKEEFVHV-LRRQSTGFPRGSSKYR 225          
BLAST of EY665563 vs. ExPASy Swiss-Prot
Match: TOE2_ARATH (AP2-like ethylene-responsive transcription factor TOE2 OS=Arabidopsis thaliana GN=TOE2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.073e-24
Identity = 52/119 (43.70%), Postives = 65/119 (54.62%), Query Frame = 1
Query:  301 EAMEESEPEPP---VTRQFFPV----DFQEQQATSSEAGAGGLAFPRANWVGVKFCQSEPIVEAGKSVIEAPQPLKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDT 636
            E  EE + E     +T++FFPV    +F +  A SS +    ++F R    G          +A + +    QP+KK          QYRGVTFYRRTGRWESHIWD GKQVYLGGFDT
Sbjct:   74 EEEEEDDDERSAVMMTKEFFPVAKGMNFMDSSAQSSRSTVD-ISFQRGKQGGDFIGSGSGGGDASRVMQPPSQPVKKSRRGPRSKSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDT 191          

HSP 2 Score: 41.9726 bits (97), Expect = 2.073e-24
Identity = 19/29 (65.52%), Postives = 23/29 (79.31%), Query Frame = 2
Query:  683 RGAEADINFSIEDYEDDLKQMSNFTQGRV 769
            RG EADINF I DYE+DLKQM+N ++  V
Sbjct:  207 RGLEADINFVIGDYEEDLKQMANLSKEEV 235          

HSP 3 Score: 24.6386 bits (52), Expect = 2.073e-24
Identity = 12/19 (63.16%), Postives = 13/19 (68.42%), Query Frame = 3
Query:  747 ATLPKEEFVHGLRRPSTGF 803
            A L KEE V  LRR S+GF
Sbjct:  228 ANLSKEEVVQVLRRQSSGF 246          
BLAST of EY665563 vs. ExPASy Swiss-Prot
Match: TOE3_ARATH (AP2-like ethylene-responsive transcription factor TOE3 OS=Arabidopsis thaliana GN=TOE3 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.027e-19
Identity = 68/166 (40.96%), Postives = 77/166 (46.39%), Query Frame = 1
Query:  331 PVTRQFFPVDFQEQQATSSEAGAGGLAFPRANWVGVKFCQSEPIVEAGKSVIEAPQPLKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTXXXXXXXXXXXXIKVPGSGGRHKLQYRRL*G*LETDEQLYPRKSLYMDFADQAPGFPRGSSKYR 828
            PVTR FFP       A S E G     F   N VG    +S+P         E   P+KK          QYRGVTFYRRTGRWESHIWD GKQVYLGGFDT            IK  G               L+    L   + +++    Q+ GFPRGSSKYR
Sbjct:   40 PVTRNFFP-------AQSMEPGVRWSGF---NSVG----KSDPSGSGRPEEPEISPPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFDIEDYLDDLKQMGNLTKEEFMHV-LRRQSTGFPRGSSKYR 190          
BLAST of EY665563 vs. ExPASy Swiss-Prot
Match: SNZ_ARATH (AP2-like ethylene-responsive transcription factor SNZ OS=Arabidopsis thaliana GN=SNZ PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.646e-17
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 1
Query:  544 YRGVTFYRRTGRWESHIWDSGKQVYLGGFDT 636
            YRGVTFYRRTGRWESHIWD GKQVYLGGFDT
Sbjct:  109 YRGVTFYRRTGRWESHIWDCGKQVYLGGFDT 139          

HSP 2 Score: 35.8094 bits (81), Expect = 2.646e-17
Identity = 13/28 (46.43%), Postives = 22/28 (78.57%), Query Frame = 2
Query:  677 RSRGAEADINFSIEDYEDDLKQMSNFTQ 760
            R RG +ADINF ++DY+ D+++M N ++
Sbjct:  153 RFRGLQADINFIVDDYKQDIEKMKNLSK 180          

HSP 3 Score: 21.9422 bits (45), Expect = 2.646e-17
Identity = 10/14 (71.43%), Postives = 10/14 (71.43%), Query Frame = 3
Query:  753 LPKEEFVHGLRRPS 794
            L KEEFV  LRR S
Sbjct:  178 LSKEEFVQSLRRAS 191          
BLAST of EY665563 vs. ExPASy Swiss-Prot
Match: RAP27_ARATH (Ethylene-responsive transcription factor RAP2-7 OS=Arabidopsis thaliana GN=RAP2-7 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.651e-17
Identity = 72/254 (28.35%), Postives = 96/254 (37.80%), Query Frame = 1
Query:   79 NDSLKDIEESEACSSQKTSIDGDDEKGKQXXXXXXXXXXXXXIENGSDEEIGASEXXXXXXXXXXKIFGVCLYQEAMEESEPEPPVTRQFFPVDFQEQQATSSEAGAGGLAFPRANWVGVKFCQ----SEPIVEAGKSVIEAPQPLKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTXXXXXXXXXXXXIKVPGSGGRHKLQYRRL*G*LETDEQLYPRKSLYMDFADQAPGFPRGSSKYR 828
            N +   +EES   +S   + DGD++                   +G DE   AS                               VT++FFPV          E  +        NW+ + F +       +V    +    P  +KK          QYRGVTFYRRTGRWESHIWD GKQVYLGGFDT            IK  G               ++  + L   + +++    Q+ GF RGSSKYR
Sbjct:   29 NSAGNRVEESGTSTSSVINADGDEDSCSTRAFTLSFDILKVGSSSGGDESPAASAS-----------------------------VTKEFFPVSGDCGHLRDVEGSSSS-----RNWIDLSFDRIGDGETKLVTPVPTPAPVPAQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFTLGDYEEDMKQVQNLSKEEFVHI-LRRQSTGFSRGSSKYR 247          
BLAST of EY665563 vs. ExPASy Swiss-Prot
Match: SMZ_ARATH (AP2-like ethylene-responsive transcription factor SMZ OS=Arabidopsis thaliana GN=SMZ PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.456e-13
Identity = 47/113 (41.59%), Postives = 55/113 (48.67%), Query Frame = 1
Query:  502 LKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDSGKQVYLGGFDTXXXXXXXXXXXXIKVPGSGGRHKL---QYRRL*G*LETDEQLYPRKSLYMD-FADQAPGFPRGSSKYR 828
            +KK          QYRGVTFYRRTGRWESHIWD GKQVYLGGFDT            IK  G           YR      + D+     K  ++     ++  F RGSSKY+
Sbjct:  109 VKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAYAAARAYDRAAIKFRGLDADINFVVDDYRH-----DIDKMKNLNKVEFVQTLRRESASFGRGSSKYK 216          
The following BLAST results are available for this feature:
BLAST of EY665563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
AP2_ARATH2.695e-2835.82Floral homeotic protein APETALA 2 OS=Arabidopsis t... [more]
TOE2_ARATH2.073e-2443.70AP2-like ethylene-responsive transcription factor ... [more]
TOE3_ARATH1.027e-1940.96AP2-like ethylene-responsive transcription factor ... [more]
SNZ_ARATH2.646e-1796.77AP2-like ethylene-responsive transcription factor ... [more]
RAP27_ARATH3.651e-1728.35Ethylene-responsive transcription factor RAP2-7 OS... [more]
SMZ_ARATH5.456e-1341.59AP2-like ethylene-responsive transcription factor ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-070-A06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665563 ID=EY665563; Name=EY665563; organism=Citrus sinensis; type=EST; length=835bp
AAAAAGTATATAGAGTCTGCTTTCATATAAAATAAATAAATCGTGAGAAT
TTTTTCTTTTTAAAAAATGTGGGATCTGAATGACTCGCTGAAAGATATAG
AAGAGTCAGAAGCTTGCTCATCGCAAAAGACCTCCATAGATGGCGATGAT
GAGAAGGGAAAACAAGTGGGATCCGTTTCGAATTCAAGCTCTTCAGCCGT
GGTAATAGAAAACGGATCCGACGAAGAGATTGGTGCTTCTGAGAGAAGAT
TATTAAGTCGTAGTGGCGGCAGTAAAATATTTGGAGTATGTTTGTATCAA
GAAGCCATGGAGGAGAGTGAACCAGAACCACCGGTGACCCGGCAGTTTTT
TCCTGTTGATTTTCAGGAGCAGCAAGCCACATCGAGTGAAGCTGGAGCTG
GGGGACTGGCCTTCCCTCGGGCTAACTGGGTTGGTGTCAAGTTTTGCCAA
TCGGAGCCCATCGTTGAGGCTGGAAAATCGGTTATTGAAGCTCCTCAGCC
CCTGAAAAAAAGCAGGCGTGGACCCAGGTCAAGGAGTTCTCAGTATAGAG
GTGTCACCTTTTACAGAAGAACTGGAAGATGGGAATCTCATATATGGGAT
TCTGGGAAACAAGTTTATCTAGGTGGATTTGACACTGCACATGCAGCTGC
TCGTGCTTATGATAGGGCAGCTATCAAGGTCCCGGGGAGCGGAGGCAGAC
ATAAACTTCAGTATAGAAGATTATGAGGATGACTTGAAACAGATGAGCAA
CTTTACCCAAGGAAGAGTTTGTACATGGACTTCGCCGACCAAGCACCGGG
TTTCCCCAGAGGAAGCTCCAAATATAGAAGGAGTA
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