CX069579

Overview
NameCX069579
Unique NameCX069579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069579_ssr191 microsatellite CX069579_ssr191:191..202. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4298 contig Csv1_Contig4298:1..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX069579 vs. ExPASy Swiss-Prot
Match: UTP11_ORYSJ (Probable U3 small nucleolar RNA-associated protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0810000 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 6.092e-13
Identity = 40/72 (55.56%), Postives = 47/72 (65.28%), Query Frame = -2 
Query:  349 DDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHXXXXXXXXXXXXXXXEIVCPTSKAVYKWRFERKR 564
            D+IP  IKRKTA+SYRELE RK+RVQ+LEKLY DM+L                EI   TS+ VYKWR +RKR
Sbjct:  158 DNIPSRIKRKTASSYRELEERKQRVQKLEKLYADMALQKELKKPGRKRKLREDEIENQTSRPVYKWRAQRKR 229
[Close]
BLAST of CX069579 vs. ExPASy Swiss-Prot
Match: UTP11_ARATH (Probable U3 small nucleolar RNA-associated protein 11 OS=Arabidopsis thaliana GN=At3g60360 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.447e-11
Identity = 34/71 (47.89%), Postives = 43/71 (60.56%), Query Frame = -2 
Query:  349 DIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHXXXXXXXXXXXXXXXEIVCPTSKAVYKWRFERKR 561
            +IP  IK+K   SYR+LEGRK R ++LEKLY DMS+                E++ P  KAVYKWR +RKR
Sbjct:  158 EIPKDIKKKMDRSYRDLEGRKSRAKDLEKLYTDMSMQKELQKKGRKRKLRDDELLNPNGKAVYKWRADRKR 228
The following BLAST results are available for this feature:
BLAST of CX069579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UTP11_ORYSJ6.092e-1355.56Probable U3 small nucleolar RNA-associated protein... [more]
UTP11_ARATH7.447e-1147.89Probable U3 small nucleolar RNA-associated protein... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_11E02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11E02-J3-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069579 ID=CX069579; Name=CX069579; organism=Citrus sinensis; type=EST; length=571bp
TTTTTTTTTTTTTTTTTAACAAAAAAATCCTGTATTAATTTCAAGAAAAA
ATTCATTGAAGTCAAACGAAACGACAAAAACTACAACCGACACATCACTC
AAAAATTTCATTATTTTGTCAGTCTACGCTCGGAAATTATTAAAATTACA
TTTTTGAAATTATTCAGTACTCCCTTCCAGTTTCCACACCCATCATCATC
ATTCATCAGCTCGAATCCTCATGCAAACTGCTTGGTCCTAATTCAGCCTC
CAGCACATGGCTACCAGTCTACAAAACAAATCCCTCTCATAACAAAACAA
GTGGACGGGGCTAATTTGACAAAATTCCCTCAAAATGTACCCTCTTTACC
GCTTCCGCTCAAACCGCCACTTATATACAGCCTTGGAGGTTGGGCAAACA
ATCTCCTCTTCACGTAGTTTGCGTTTCCGGCCCTTTTTCTGTAATTCCTT
ATGCAATGACATATCCATATACAGTTTTTCCAACTCCTGTACTCTCTTTT
TCCTCCCTTCTAGTTCTCTGTAGGAAGCTGCAGTCTTCCTCTTAATGTGA
TCAGGAATGTCGTCAAAATCA
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