FC871893

Overview
NameFC871893
Unique NameFC871893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length337
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13856 contig Csv1_Contig13856:605..941. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC871893 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.083e-17
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 KEENFSLPQEKKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 159
            KEE   +PQ KKDDQK+VDA LIKAIEAVP+LK YLGARFSL+ GMKPHELVF
Sbjct:  181 KEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233
[Close]
BLAST of FC871893 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.083e-17
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 KEENFSLPQEKKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 159
            KEE   +PQ KKDDQK+VDA LIKAIEAVP+LK YLGARFSL+ GMKPHELVF
Sbjct:  181 KEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233
[Close]
BLAST of FC871893 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.333e-17
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 KEENFSLPQEKKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 159
            K+E   LPQEKKDDQK+VD  L+KAIE VP+LKAYLGARFSL+AGMKPHELVF
Sbjct:  182 KKEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234
[Close]
BLAST of FC871893 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.096e-17
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 KEENFSLPQEKKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 159
            KEE   +PQEKK+DQK+VDA LIK+IEAVP+LK YLGARFSL  GMKPHELVF
Sbjct:  181 KEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233
The following BLAST results are available for this feature:
BLAST of FC871893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RL63_ARATH4.083e-1779.2560S ribosomal protein L6-3 OS=Arabidopsis thaliana... [more]
RL62_ARATH4.083e-1779.2560S ribosomal protein L6-2 OS=Arabidopsis thaliana... [more]
RL6_MESCR5.333e-1779.2560S ribosomal protein L6 OS=Mesembryanthemum cryst... [more]
RL61_ARATH9.096e-1777.3660S ribosomal protein L6-1 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK3CD04FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3CD04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871893 ID=FC871893; Name=FC871893; organism=Citrus sinensis; type=EST; length=337bp
AAAGAGGAGAACTTTTCGCTTCCTCAGGAGAAGAAGGATGATCAGAAGTC
TGTTGATGCACCATTGATCAAGGCCATTGAAGCTGTTCCAGACTTGAAGG
CTTACCTTGGTGCTAGGTTTTCCCTCAGGGCCGGCATGAAACCTCATGAA
CTTGTCTTCTGAAAACATGTTGAAACAATTTAGGATTGCTTTGCTTTTTC
CTACTTGTTATGTTTTGTTTGAAATTTATTTTAGCAGTTGTAATCTTTGT
TTCATGGGATCAGACATCTAAATTTTGGTATGATGTTAGGCAAATGAAAT
GCTTTTCTTAAAGTACAAAAAAAAAAAAAAAAAAAAA
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