CX044009

Overview
NameCX044009
Unique NameCX044009
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX044009 vs. ExPASy Swiss-Prot
Match: HEM11_CUCSA (Glutamyl-tRNA reductase 1, chloroplastic OS=Cucumis sativus GN=HEMA1 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.167e-55
Identity = 104/118 (88.14%), Postives = 110/118 (93.22%), Query Frame = -2
Query:  388 EESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLFHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQK 741
            EESKQF AWRDSLETVPTIKKLRAYAERIR AEL+KCLSKMGDDI KKTRRAVDDLSRGIVNKL HGPMQHLRCDGSDSRTL ETLENMHALNRMF LET+ ++ EQK+RAK+EQNQK
Sbjct:  435 EESKQFEAWRDSLETVPTIKKLRAYAERIRTAELEKCLSKMGDDIPKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLSETLENMHALNRMFSLETEIAVLEQKIRAKVEQNQK 552          
BLAST of CX044009 vs. ExPASy Swiss-Prot
Match: HEM11_ARATH (Glutamyl-tRNA reductase 1, chloroplastic OS=Arabidopsis thaliana GN=HEMA1 PE=2 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 3.871e-49
Identity = 96/118 (81.36%), Postives = 105/118 (88.98%), Query Frame = -2
Query:  388 EESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLFHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQK 741
            EES QF AWRDSLETVPTIKKLRAYAERIRVAEL+KC+SKMGDDI+KKT RAVDDLSRGIVN+  HGPMQHLRCDGSDSRTL ETLENMHALNRM+GLE D  + E+K++A  EQ QK
Sbjct:  428 EESTQFEAWRDSLETVPTIKKLRAYAERIRVAELEKCMSKMGDDINKKTTRAVDDLSRGIVNRFLHGPMQHLRCDGSDSRTLSETLENMHALNRMYGLEKD--ILEEKLKAMAEQQQK 543          
BLAST of CX044009 vs. ExPASy Swiss-Prot
Match: HEM12_CUCSA (Glutamyl-tRNA reductase 2, chloroplastic OS=Cucumis sativus GN=HEMA2 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.006e-46
Identity = 87/118 (73.73%), Postives = 101/118 (85.59%), Query Frame = -2
Query:  388 EESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLFHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQK 741
            EE  +F AWRDSLETVPTIKK RAY ERIR AELDKCLSKMG+DI KK + A++DLS GI NKL HGP+QHLRCDG+DSRTLDE L+NMHA+NRMF LETD S+ E+K+RAK+E+ QK
Sbjct:  425 EEINKFEAWRDSLETVPTIKKFRAYVERIRAAELDKCLSKMGEDIPKKKKVAINDLSLGIANKLLHGPIQHLRCDGNDSRTLDEILQNMHAINRMFDLETDLSVLEEKIRAKVERGQK 542          
BLAST of CX044009 vs. ExPASy Swiss-Prot
Match: HEM12_HORVU (Glutamyl-tRNA reductase 2 (Fragment) OS=Hordeum vulgare GN=HEMA2 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.522e-45
Identity = 84/118 (71.19%), Postives = 107/118 (90.68%), Query Frame = -2
Query:  391 EESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDD-ISKKTRRAVDDLSRGIVNKLFHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQ 741
            +E K+F AWRDSLETVPTIKKLR+YA+RIR +ELDKCL K+G+D ++KKTRR++++LS GIVNKL HGP+QHLRCDGSDSRTLDETL+NMHALNRMF L+T+ ++ EQK++AK+E+ Q
Sbjct:  347 QELKRFEAWRDSLETVPTIKKLRSYADRIRASELDKCLQKIGEDNLNKKTRRSIEELSTGIVNKLLHGPLQHLRCDGSDSRTLDETLDNMHALNRMFNLDTEKAVLEQKIKAKVEKTQ 464          
BLAST of CX044009 vs. ExPASy Swiss-Prot
Match: HEM1_ORYSJ (Glutamyl-tRNA reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os10g0502400 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.785e-45
Identity = 83/118 (70.34%), Postives = 107/118 (90.68%), Query Frame = -2
Query:  391 EESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDD-ISKKTRRAVDDLSRGIVNKLFHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQ 741
            +E K+F AWRDSLETVPTIKKLR+YA+RIR +EL+KCL K+G+D ++KK RR++++LS GIVNKL HGP+QHLRCDGSDSRTLDETLENMHALNRMF L+T+ ++ EQK++AK+E++Q
Sbjct:  419 QELKRFEAWRDSLETVPTIKKLRSYADRIRASELEKCLQKIGEDALTKKMRRSIEELSTGIVNKLLHGPLQHLRCDGSDSRTLDETLENMHALNRMFSLDTEKAIIEQKIKAKVEKSQ 536          
BLAST of CX044009 vs. ExPASy Swiss-Prot
Match: HEM1_ORYSI (Glutamyl-tRNA reductase, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_033071 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 5.785e-45
Identity = 83/118 (70.34%), Postives = 107/118 (90.68%), Query Frame = -2
Query:  391 EESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDD-ISKKTRRAVDDLSRGIVNKLFHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQ 741
            +E K+F AWRDSLETVPTIKKLR+YA+RIR +EL+KCL K+G+D ++KK RR++++LS GIVNKL HGP+QHLRCDGSDSRTLDETLENMHALNRMF L+T+ ++ EQK++AK+E++Q
Sbjct:  419 QELKRFEAWRDSLETVPTIKKLRSYADRIRASELEKCLQKIGEDSLTKKMRRSIEELSTGIVNKLLHGPLQHLRCDGSDSRTLDETLENMHALNRMFSLDTEKAIIEQKIKAKVEKSQ 536          
BLAST of CX044009 vs. ExPASy Swiss-Prot
Match: HEM11_HORVU (Glutamyl-tRNA reductase 1, chloroplastic OS=Hordeum vulgare GN=HEMA1 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.868e-45
Identity = 83/118 (70.34%), Postives = 106/118 (89.83%), Query Frame = -2
Query:  391 EESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDD-ISKKTRRAVDDLSRGIVNKLFHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQ 741
            +E K+F AWRDSLETVPTIKKLR+YA+RIR +EL+KCL K+G+D ++KK RR++++LS GIVNKL HGP+QHLRCDGSDSRTLDETLENMHALNRMF L+T+ ++ EQK++AK+E+ Q
Sbjct:  409 QELKRFEAWRDSLETVPTIKKLRSYADRIRASELEKCLQKIGEDNLNKKMRRSIEELSTGIVNKLLHGPLQHLRCDGSDSRTLDETLENMHALNRMFSLDTEKAVLEQKIKAKVEKTQ 526          
BLAST of CX044009 vs. ExPASy Swiss-Prot
Match: HEM13_HORVU (Glutamyl-tRNA reductase 3, chloroplastic OS=Hordeum vulgare GN=HEMA3 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.091e-43
Identity = 79/118 (66.95%), Postives = 105/118 (88.98%), Query Frame = -2
Query:  391 EESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDD-ISKKTRRAVDDLSRGIVNKLFHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQNQ 741
            EE K+F AWRDS+ETVPTIKKLR+YA+R+R +ELDKCL K+G+D ++KK RR+++ LS GIVN+L HGP+QHLRCDG+D+RTLDETLENMHALNRMFGL+T+ ++ EQK++ K+E+ +
Sbjct:  415 EELKRFEAWRDSMETVPTIKKLRSYADRVRASELDKCLQKIGEDALTKKMRRSIEQLSTGIVNRLLHGPLQHLRCDGTDNRTLDETLENMHALNRMFGLDTEKAVMEQKIKTKVEKQK 532          
BLAST of CX044009 vs. ExPASy Swiss-Prot
Match: HEM12_ARATH (Glutamyl-tRNA reductase 2, chloroplastic OS=Arabidopsis thaliana GN=HEMA2 PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 8.645e-41
Identity = 81/115 (70.43%), Postives = 95/115 (82.61%), Query Frame = -2
Query:  397 EESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLFHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLETDTSLFEQKVRAKIEQ 741
            +ESK F AWRDSLETVPTIKKLR Y ERI  AE++K L KMG D++KK R+ VDDL RGIVNKL HGPMQHLRCDG+DSRTL ETL+NM ALNRM+GL  D  + E+K+RAK+E+
Sbjct:  417 DESKHFEAWRDSLETVPTIKKLRGYTERIIAAEIEKSLPKMGIDMNKKMRKTVDDLIRGIVNKLLHGPMQHLRCDGNDSRTLSETLDNMQALNRMYGL--DAEILEEKIRAKVEK 529          
BLAST of CX044009 vs. ExPASy Swiss-Prot
Match: HEM1_SYNS9 (Glutamyl-tRNA reductase OS=Synechococcus sp. (strain CC9902) GN=hemA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.533e-16
Identity = 44/99 (44.44%), Postives = 63/99 (63.64%), Query Frame = -2
Query:  445 EESKQFAAWRDSLETVPTIKKLRAYAERIRVAELDKCLSKMGDDISKKTRRAVDDLSRGIVNKLFHGPMQHLRCDGSDSRTLDETLENMHALNRMFGLE 741
            +E++QF  W DSLE VPTI +LR+  E IR  EL K LS+MG D S + R+ V+ LS+GI+NK+ H P+  LR     S+   E  + + A+ R+F L+
Sbjct:  336 DEAQQFLDWWDSLEAVPTINQLRSSMETIRTEELQKALSRMGPDFSARERKVVEALSKGIINKILHTPVTKLRA----SQARSERQQALRAVERLFDLD 430          
The following BLAST results are available for this feature:
BLAST of CX044009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
HEM11_CUCSA6.167e-5588.14Glutamyl-tRNA reductase 1, chloroplastic OS=Cucumi... [more]
HEM11_ARATH3.871e-4981.36Glutamyl-tRNA reductase 1, chloroplastic OS=Arabid... [more]
HEM12_CUCSA4.006e-4673.73Glutamyl-tRNA reductase 2, chloroplastic OS=Cucumi... [more]
HEM12_HORVU1.522e-4571.19Glutamyl-tRNA reductase 2 (Fragment) OS=Hordeum vu... [more]
HEM1_ORYSJ5.785e-4570.34Glutamyl-tRNA reductase, chloroplastic OS=Oryza sa... [more]
HEM1_ORYSI5.785e-4570.34Glutamyl-tRNA reductase, chloroplastic OS=Oryza sa... [more]
HEM11_HORVU9.868e-4570.34Glutamyl-tRNA reductase 1, chloroplastic OS=Hordeu... [more]
HEM13_HORVU1.091e-4366.95Glutamyl-tRNA reductase 3, chloroplastic OS=Hordeu... [more]
HEM12_ARATH8.645e-4170.43Glutamyl-tRNA reductase 2, chloroplastic OS=Arabid... [more]
HEM1_SYNS92.533e-1644.44Glutamyl-tRNA reductase OS=Synechococcus sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_14G11_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-14G11-N22-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX044009 ID=CX044009; Name=CX044009; organism=Citrus sinensis; type=EST; length=742bp
TTTTTTTTTTTTTTTTTCGTGATACTGCAAAAGTTCTTTCATGGAGACCG
AAAGGGAAAAAATCCCCAACAAAGACATTTACACAAGCGTGTCTCTATAT
AATGAAGTACATTAATTACATGGATTTATAGTGGTTTCATCGGTACAAGG
ATCAGGCTCACCTCTATCCTAGGAGGTTGGAAGGCACCCAAATGAGAGTT
AGGAAAAAAGTGTCTTATAACAACACTTGACGAATTGAATGATCCCACAT
AGGGATCTACACTGTTATACTATTCAAATGAAAAATACAGCAATGCCGAG
ACTCACAACAAGGTGAGGACGTTTTCCTCTTATTCAATTGAGGAAGTGAA
TGAAGTGCCATTGACAAACTGGTATTCAAAAAGCTCACTTCTGGTTTTGT
TCTATCTTGGCTCGAACCTTTTGCTCGAAAAGAGATGTATCTGTTTCAAG
GCCAAACATTCTGTTTAGAGCATGCATGTTCTCAAGGGTCTCGTCTAGAG
TCCTGCTGTCACTCCCATCACATCTCAAGTGCTGCATTGGACCATGAAAA
AGCTTATTCACGATACCACGGCTAAGGTCATCGACAGCCCTCCTTGTTTT
CTTTGAGATATCATCACCCATCTTTGATAGGCATTTATCTAACTCTGCCA
CCCTGATTCTCTCAGCATAAGCTCTCAATTTCTTAATAGTAGGAACAGTC
TCCAATGAATCCCTCCAAGCTGCAAACTGTTTTGATTCCTCA
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