EY665546

Overview
NameEY665546
Unique NameEY665546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8010 contig Csv1_Contig8010:1..882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY665546 vs. ExPASy Swiss-Prot
Match: UMP1_ARATH (Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.606e-69
Identity = 139/249 (55.82%), Postives = 165/249 (66.27%), Query Frame = 1 
Query:   25 MATQIFSRMFLSNPTATKALASLLSRSFSTTATTIKXXXXXXXXXXXXXXXXXXTAVRFGSGGIVTGPSARGMSTRPATASLNDSSPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWVXXXXXXXXXXXXXXXXXXXXXXXXFERRRKTCRTG 771
            MAT   SR  L  P   K+L+ L +RSF+++A   K                  +  R   GG+V   S +G+ST+  ++SLND +PNWSNRPPKETILLDGCDFEHWLVV+E P+G+PTRDEIID YIKTLA +  G EDEARMKIYSVST+ YYAFGALV E+ S+KLKEL  VRWVLPDSYLDV+NKDYGGEPFI+G+AVPYDPKYHEEW+                        FERRR+    G
Sbjct:    1 MATHTISRSILCRPA--KSLSFLFTRSFASSAPLAKSPASSLLSRSRPLVAAFSSVFR---GGLV---SVKGLSTQATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVEPPQGEPTRDEIIDSYIKTLAQIV-GSEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFIDGKAVPYDPKYHEEWIRNNARANERNRRNDRPRNNDRSRNFERRRENMAGG 240
[Close]
BLAST of EY665546 vs. ExPASy Swiss-Prot
Match: DAG_ANTMA (DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.680e-32
Identity = 70/147 (47.62%), Postives = 97/147 (65.99%), Query Frame = 1 
Query:  226 PSARGMSTRPATASLNDSSPNWSNRPPKETILLDGCDFEHWLVVMEKPEGD-PTRDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFINGQAVP-----YDPK 648
            P+ R ++    ++  N+++ N      +ETI+L GCD+ HWL+VME P+   PTR+++ID Y+ TLATV  G  +EA+  +Y+ ST  Y  F   V EETS K K LPGV WVLPDSY+DVKNKDYGG+ ++NG+ +P     Y PK
Sbjct:   51 PTVRALTDGEYSSRRNNNNNNSGEE--RETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVL-GSMEEAKKNMYAFSTTTYTGFQCTVTEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCQYPTYQPK 194
The following BLAST results are available for this feature:
BLAST of EY665546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UMP1_ARATH2.606e-6955.82Uncharacterized protein At3g15000, mitochondrial O... [more]
DAG_ANTMA9.680e-3247.62DAG protein, chloroplastic OS=Antirrhinum majus GN... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-001-F03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665546 ID=EY665546; Name=EY665546; organism=Citrus sinensis; type=EST; length=881bp
CCACGCGTCCGGGGTTTAGCAGAAATGGCGACCCAGATATTCTCTCGTAT
GTTTCTCTCAAATCCCACCGCCACCAAAGCGCTAGCGTCTCTCTTGTCTC
GCTCGTTCTCCACCACCGCCACCACCATCAAGCCCTCTTCCCGTTCTCTA
CCCCTCCTCTTCCTCAACCGCTTCCGCCCTTTGTCCACCGCGGTTCGTTT
TGGCTCTGGCGGAATCGTCACCGGGCCCTCCGCTCGCGGGATGTCGACAC
GTCCCGCCACCGCTTCGCTCAACGACAGCAGCCCCAATTGGTCGAACCGG
CCGCCTAAAGAAACGATTTTGCTTGATGGGTGTGATTTTGAGCACTGGCT
CGTTGTGATGGAAAAGCCTGAAGGGGACCCCACTAGGGACGAGATTATTG
ATCGTTATATCAAAACCCTTGCCACGGTTTTTGACGGCCGTGAGGATGAA
GCAAGGATGAAGATCTACTCAGTTTCAACTAAGCACTACTACGCATTTGG
AGCTCTTGTGGATGAAGAAACTTCATACAAGCTCAAAGAGTTGCCTGGAG
TGCGCTGGGTTCTTCCTGATTCATATTTGGATGTTAAAAACAAAGATTAT
GGAGGGGAACCTTTCATTAATGGGCAGGCTGTTCCTTATGACCCAAAGTA
TCATGAGGAATGGGTTAGGAACAATGCTCGTGCTAATGAGCGTAATAGGC
GCAATGATAGGNCTCGCAGCTACGATAGATCTAGAAACTTTGAAAGAAGA
AGGAAGACATGCAGAACCGGCAATTTCAGAAACAGGGTAATGCAAACCCT
GCACCTAATATGAGTGGTATGCCCCCTAACAAGTTCCCTTCCAGAAGCAA
GATGGCACCAATATTGGGAAGATGGCCCAGA
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