CV886270

Overview
NameCV886270
Unique NameCV886270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length937
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV886270 vs. ExPASy Swiss-Prot
Match: NOTUM_MOUSE (Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.140e-17
Identity = 56/175 (32.00%), Postives = 91/175 (52.00%), Query Frame = 2 
Query:  248 CLDGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNVTTCLERKKT--RLGSSKQMVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCDNFRALFP----VGTKVKCFADAGYFINAK 754
            C DGSP  Y+  +  G+    WL+ +EGG +C N   C  R  T  RL SSK        +G+LS++ + NP ++N N + + YC    ++G     +  N   F G+ + Q V+ +L+ KG+  A+  +L+G SAGG   +L+ D    L         +V+  AD+G+F++ K
Sbjct:  108 CNDGSPAGYYLKESKGS--RRWLLFLEGGWYCFNRENCDSRYSTMRRLMSSKDWPHTRTGTGILSSQPEENPHWWNANMVFIPYCSSDVWSG-ASPKSDKNEYAFMGSLIIQEVVRELLGKGLSGAKVLLLAGSSAGGTGVLLNVDRVAELLEELGYPSIQVRGLADSGWFLDNK 279
[Close]
BLAST of CV886270 vs. ExPASy Swiss-Prot
Match: NOTUM_HUMAN (Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.316e-17
Identity = 55/175 (31.43%), Postives = 93/175 (53.14%), Query Frame = 2 
Query:  248 CLDGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNVTTCLERKKT--RLGSSKQMVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNAQNAVLSGCSAGGLTSILHCD----NFRALFPVGTKVKCFADAGYFINAK 754
            C DGSP  Y+  +  G+    WL+ +EGG +C N   C  R  T  RL SS+   +    +G+LS++ + NP ++N N + + YC    ++G   + +  N   F GA + Q V+ +L+ +G+  A+  +L+G SAGG   +L+ D        L     +V+  AD+G+F++ K
Sbjct:  101 CNDGSPAGYYLKESRGS--RRWLLFLEGGWYCFNRENCDSRYDTMRRLMSSRDWPRTRTGTGILSSQPEENPYWWNANMVFIPYCSSDVWSG-ASSKSEKNEYAFMGALIIQEVVRELLGRGLSGAKVLLLAGSSAGGTGVLLNVDRVAEQLEKLGYPAIQVRGLADSGWFLDNK 272
The following BLAST results are available for this feature:
BLAST of CV886270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NOTUM_MOUSE1.140e-1732.00Protein notum homolog OS=Mus musculus GN=Notum PE=... [more]
NOTUM_HUMAN3.316e-1731.43Protein notum homolog OS=Homo sapiens GN=NOTUM PE=... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_022A12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_022_T7_A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886270 ID=CV886270; Name=CV886270; organism=Citrus sinensis; type=EST; length=937bp
CTTTCTCTTGAGTTCCAAAAATTGCCATTACTATTTCTTCCCAATGCACT
AACCTGGGCTCCTTTTGCAAACTCTTTAAACTAGTCCCATTTGCAATTTT
TTTTTTTTTTTGCCTCATTTCAGAATGGTTGCCGCAAGAATGGGCCAATG
GTTGAATCTTTTAGTATGTGCACTCATATTACTGAAAGCTGACGGCTTTA
ATGTAGGAATCACTTATGTTGAGAATGCTGTAGTGAAAGGAGCTGTTTGT
TTGGATGGTAGCCCGCCTGCTTACCATTTTGATAAGGGGTTTGGTGCGGG
GATCAATAATTGGTTGGTTCACATTGAGGGAGGAGGATGGTGCAACAATG
TCACAACTTGTCTTGAACGTAAGAAAACCCGTTTAGGTTCATCTAAGCAA
ATGGTCAAGGTAGTTGCATTCTCTGGGATGCTGAGCAACAAGCAAAAATT
TAACCCAGACTTCTACAATTGGAATAGAATCAAGGTTAGATACTGTGATG
GGGCATCGTTTACTGGAGATGTGGAGGCTGTCAATCCAGCAAATAACCTT
CACTTCAGAGGAGCAAGGGTTTTTCAAGCTGTCATGGAGGATCTAATGGC
TAAAGGGATGAAAAATGCTCAAAATGCTGTTCTTTCTGGCTGCTCAGCTG
GGGGATTGACTTCAATTTTGCATTGTGATAACTTCCGAGCTCTCTTCCCT
GTGGGTACTAAAGTAAAATGCTTTGCAGATGCTGGTTATTTTATCAACGC
GAAGGATGTTTCTGGAGCAAGTCACATTGAGCAGTTTTATGCTCAAGTGG
TCGCAACACATGGATCAGCTAAGCATTTGCCAGCATCCTGCACTTCAAGA
TTGAGCCCAGGACTGTGTTTCTTCCCACATACATGGCACGGCAAATAACA
ACACCGCTATTTATCATAAATGCGGCCTATGATTCAT
back to top