FC871888

Overview
NameFC871888
Unique NameFC871888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8076 contig Csv1_Contig8076:4..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC871888 vs. ExPASy Swiss-Prot
Match: LIRP1_ORYSJ (Light-regulated protein OS=Oryza sativa subsp. japonica GN=LIR1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.244e-21
Identity = 50/99 (50.51%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:  151 ASRRSAIKV---AATTSNDPSTFDYNSAFSVFPAEACEVIGGDACSAEMYPEAKLKPEAKNDTSTTASEPIEREYLEYNDTNTVFKGEACDDLGGTFCE 438
            A RR A++V   AA  + + +  DY+S  SVFP EAC++IGG+AC+ +MYPEAKL   A    S  A+E ++R+YL Y++  TVF  EACDDLGG FC+
Sbjct:   28 APRRVALRVRAAAAAVAVEAAEVDYSSNISVFPMEACDLIGGEACNVQMYPEAKLSSSAAVAVSRAAAEEVDRDYLSYDEPTTVFPEEACDDLGGEFCK 126
The following BLAST results are available for this feature:
BLAST of FC871888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LIRP1_ORYSJ1.244e-2150.51Light-regulated protein OS=Oryza sativa subsp. jap... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK1DG09FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1DG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871888 ID=FC871888; Name=FC871888; organism=Citrus sinensis; type=EST; length=767bp
CAACGCAAAACACACAACATAAACACAACACAAATATTCAAAATGCAGGC
TGCTTTGAGCATTTCACCAACAACCCTTGTCCCTCTAACAACCTCCAAGA
ACTTTTCCCAAGTGGCCATTTCTACTCCAAAGCTAGTAGGCAGCTCACTT
GCTTCCAGACGCAGCGCAATCAAAGTAGCTGCTACAACAAGCAATGACCC
TTCCACATTTGATTACAATTCTGCCTTCTCGGTGTTTCCAGCAGAGGCGT
GTGAGGTAATCGGTGGAGATGCGTGCTCGGCAGAGATGTATCCTGAGGCG
AAGTTGAAACCAGAGGCCAAGAACGACACATCAACAACTGCCTCAGAGCC
CATTGAGAGAGAGTATTTAGAGTACAACGATACAAACACGGTTTTCAAAG
GAGAGGCTTGTGATGATCTTGGAGGAACGTTTTGTGAACGCGAGTACCAG
AGAGGAGTCTACTAGAACTAGAAAGAACGTAATATCGGGAAACAACTATT
TGATGCTTTTACTGTATATAGTTTACCCCCGTGAACGGGTGTGCATATGG
TACAATTTCCTTTTTCTAAAATATTTTTATTTGATGCTGAAAAAAATCAA
AAATGCCTTTGTGCCAAGCTAGTTCACACGATCTGTCTGTCAAGAGTTCT
AGTGTGGAAAGGATAGTAATAAATTCAGGATTAATTTATGGTTAAAATTA
TTAATTAATATTTTAAGGGTATAATATAATTTTTTTTATTACTTGAAAAA
AAAAAAAAAAAAAAAAA
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