FC871887

Overview
NameFC871887
Unique NameFC871887
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC871887 vs. ExPASy Swiss-Prot
Match: AMT21_ORYSJ (Ammonium transporter 2 member 1 OS=Oryza sativa subsp. japonica GN=AMT2-1 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.777e-34
Identity = 62/90 (68.89%), Postives = 67/90 (74.44%), Query Frame = 1
Query:  193 KKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARLPESTHEVDGQTVTTEPFYAMATLVYFQFTFAA 462
            KKKWAVNSAFM LYA+A+ L+ WVLV +RMAFGDQLLPFWGK   AL Q YLVGRA LP + H   G    TEPFY  ATLV FQF FAA
Sbjct:   50 KKKWAVNSAFMALYAYASSLLVWVLVGFRMAFGDQLLPFWGKAGVALTQSYLVGRATLPATAH---GAIPRTEPFYPEATLVLFQFEFAA 136          

HSP 2 Score: 43.8986 bits (102), Expect = 3.777e-34
Identity = 20/35 (57.14%), Postives = 29/35 (82.86%), Query Frame = 3
Query:   96 IKKSDNA*KMTASTLVRIQNMPGLLIIYTSIKQEK 200
            + K DNA ++TASTLV IQ+MPGL+++Y SI ++K
Sbjct:   18 LNKGDNAWQLTASTLVGIQSMPGLVVLYGSIVKKK 52          
BLAST of FC871887 vs. ExPASy Swiss-Prot
Match: AMT32_ORYSJ (Ammonium transporter 3 member 2 OS=Oryza sativa subsp. japonica GN=AMT3-2 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.359e-30
Identity = 60/93 (64.52%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  193 KKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARLPESTH-EVDG--QTVTTEPFYAMATLVYFQFTFAA 462
            KKKWAVNSAFM LYAFAAV ICWV   Y M+FG++LLP WGK  PAL Q  LVGRA LP + H   DG  +T   EP Y MAT+VYFQ  FAA
Sbjct:   56 KKKWAVNSAFMALYAFAAVWICWVTWAYNMSFGEKLLPIWGKARPALDQGLLVGRAALPATVHYRADGSVETAAVEPLYPMATVVYFQCVFAA 148          

HSP 2 Score: 35.4242 bits (80), Expect = 1.359e-30
Identity = 13/35 (37.14%), Postives = 27/35 (77.14%), Query Frame = 3
Query:   96 IKKSDNA*KMTASTLVRIQNMPGLLIIYTSIKQEK 200
            + K DNA ++ A+T+V +Q++PGL+++Y  + ++K
Sbjct:   24 LNKGDNAWQLVAATVVGLQSVPGLVVLYGGVVKKK 58          
BLAST of FC871887 vs. ExPASy Swiss-Prot
Match: AMT22_ORYSJ (Ammonium transporter 2 member 2 OS=Oryza sativa subsp. japonica GN=AMT2-2 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.903e-30
Identity = 60/93 (64.52%), Postives = 68/93 (73.12%), Query Frame = 1
Query:  193 KKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARLPESTH-EVDG--QTVTTEPFYAMATLVYFQFTFAA 462
            KKKWAVNSAFM LYA+A+ LI WVLV +RMAFGD+LLPFW K  PAL Q +LV RA  P + H   DG  +T  TEPFYA A LV F+F FAA
Sbjct:   57 KKKWAVNSAFMALYAYASTLIVWVLVGFRMAFGDRLLPFWAKAGPALTQDFLVQRAVFPATAHYGSDGTLETPRTEPFYAEAALVLFEFEFAA 149          

HSP 2 Score: 37.7354 bits (86), Expect = 3.903e-30
Identity = 17/35 (48.57%), Postives = 26/35 (74.29%), Query Frame = 3
Query:   96 IKKSDNA*KMTASTLVRIQNMPGLLIIYTSIKQEK 200
            + K D A ++ A+T V IQ+MPGL++IY SI ++K
Sbjct:   25 LNKGDTAWQLVAATFVGIQSMPGLVVIYGSIVKKK 59          
BLAST of FC871887 vs. ExPASy Swiss-Prot
Match: AMT2_ARATH (Ammonium transporter 2 OS=Arabidopsis thaliana GN=AMT2 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 7.267e-30
Identity = 60/90 (66.67%), Postives = 70/90 (77.78%), Query Frame = 1
Query:  193 KKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARLPESTHEVDGQTVTTEPFYAMATLVYFQFTFAA 462
            KKKWAVNSAFM LYAFAAVL+CWVL+CY+MAFG++LLPFWGKG PA  Q YL G+A++P S            P++ MATLVYFQFTFAA
Sbjct:   48 KKKWAVNSAFMALYAFAAVLLCWVLLCYKMAFGEELLPFWGKGGPAFDQGYLKGQAKIPNSN--------VAAPYFPMATLVYFQFTFAA 129          
BLAST of FC871887 vs. ExPASy Swiss-Prot
Match: AMT23_ORYSJ (Ammonium transporter 2 member 3 OS=Oryza sativa subsp. japonica GN=AMT2-3 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.295e-27
Identity = 56/93 (60.22%), Postives = 68/93 (73.12%), Query Frame = 1
Query:  193 KKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARLPESTH-EVDG--QTVTTEPFYAMATLVYFQFTFAA 462
            KKKWAVNSAFM LYA+A+ LI WVLV +RMAFGD+LLPFWGK   AL + +LV RA +P + H   DG  ++  TEPFY  A++V FQF  AA
Sbjct:   53 KKKWAVNSAFMALYAYASTLIVWVLVGFRMAFGDRLLPFWGKAGAALTEGFLVARASVPATAHYGKDGALESPRTEPFYPEASMVLFQFELAA 145          

HSP 2 Score: 34.6538 bits (78), Expect = 1.295e-27
Identity = 14/35 (40.00%), Postives = 25/35 (71.43%), Query Frame = 3
Query:   96 IKKSDNA*KMTASTLVRIQNMPGLLIIYTSIKQEK 200
            +   DN  ++ A+T V +Q+MPGL+++Y SI ++K
Sbjct:   21 LNTGDNGWQLAAATFVGLQSMPGLVVLYGSIVKKK 55          
BLAST of FC871887 vs. ExPASy Swiss-Prot
Match: AMT31_ORYSJ (Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.201e-24
Identity = 56/98 (57.14%), Postives = 66/98 (67.35%), Query Frame = 1
Query:  193 KKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARLPESTHEVDG--------QTVTTEPFYAMATLVYFQFTFAA 462
            KKKWAVNSAFM LYAFAAV +CWV   Y M+FG +LLPFWGK  PALGQ +L+ +A LP++T    G        +T    P Y MAT+VYFQ  FAA
Sbjct:   55 KKKWAVNSAFMALYAFAAVWLCWVTWGYNMSFGHKLLPFWGKARPALGQSFLLAQAVLPQTTQFYKGGGGADAVVETPWVNPLYPMATMVYFQCVFAA 152          
BLAST of FC871887 vs. ExPASy Swiss-Prot
Match: AMT33_ORYSJ (Ammonium transporter 3 member 3 OS=Oryza sativa subsp. japonica GN=AMT3-3 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.675e-24
Identity = 52/93 (55.91%), Postives = 65/93 (69.89%), Query Frame = 1
Query:  193 KKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARLPEST---HEVDGQTVTTEPFYAMATLVYFQFTFAA 462
            KKKWA+NSAFM LYAFAAV ICWV+  Y M+FGD+LLPFWGK  PALGQ +LV ++ L  +    H    +    +P Y +AT+VYFQ  FA+
Sbjct:   52 KKKWAINSAFMALYAFAAVWICWVVWAYNMSFGDRLLPFWGKARPALGQSFLVAQSELTATAIRYHNGSAEAPMLKPLYPVATMVYFQCMFAS 144          
The following BLAST results are available for this feature:
BLAST of FC871887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
AMT21_ORYSJ3.777e-3468.89Ammonium transporter 2 member 1 OS=Oryza sativa su... [more]
AMT32_ORYSJ1.359e-3064.52Ammonium transporter 3 member 2 OS=Oryza sativa su... [more]
AMT22_ORYSJ3.903e-3064.52Ammonium transporter 2 member 2 OS=Oryza sativa su... [more]
AMT2_ARATH7.267e-3066.67Ammonium transporter 2 OS=Arabidopsis thaliana GN=... [more]
AMT23_ORYSJ1.295e-2760.22Ammonium transporter 2 member 3 OS=Oryza sativa su... [more]
AMT31_ORYSJ1.201e-2457.14Ammonium transporter 3 member 1 OS=Oryza sativa su... [more]
AMT33_ORYSJ2.675e-2455.91Ammonium transporter 3 member 3 OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK1DG08FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1DG08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871887 ID=FC871887; Name=FC871887; organism=Citrus sinensis; type=EST; length=464bp
ATATTTTAAAAAACTTTTGCATCAATCTTGTTCCCGGCCAACTCCTCCAA
TTCCTAAAACTTATCAATTGGATCTGCCAGAAGTCCACAACTGAAATCAA
AAAAAGTGACAATGCATGAAAAATGACAGCATCAACACTCGTCAGAATCC
AAAACATGCCGGGTCTCCTTATCATATACACCAGCATCAAACAAGAAAAA
GTGGGCAGTCAACTCAGCCTTCATGGTGCTCTATGCCTTTGCTGCCGTGC
TCATTTGCTGGGTCCTTGTATGCTATCGCATGGCTTTTGGTGACCAACTG
CTCCCTTTCTGGGGCAAGGGCGCCCCTGCTCTAGGCCAAAAGTACCTTGT
TGGTCGAGCCAGACTCCCAGAAAGCACCCACGAAGTTGATGGCCAAACTG
TGACCACTGAACCTTTCTATGCTATGGCTACACTTGTGTATTTTCAGTTC
ACTTTTGCTGCGAT
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