EY665503

Overview
NameEY665503
Unique NameEY665503
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665503 vs. ExPASy Swiss-Prot
Match: GCSP2_ARATH (Glycine dehydrogenase [decarboxylating] 2, mitochondrial OS=Arabidopsis thaliana GN=At4g33010 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 6.066e-21
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 1
Query:    1 TIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNL 165
            +IAQRVHGLAG F+LGL KLG  EVQ LPFFDTVK+KC+DAHAIA AA K E+NL
Sbjct:  426 SIAQRVHGLAGIFSLGLNKLGVAEVQELPFFDTVKIKCSDAHAIADAASKSEINL 480          

HSP 2 Score: 35.039 bits (79), Expect = 6.066e-21
Identity = 16/27 (59.26%), Postives = 19/27 (70.37%), Query Frame = 3
Query:  180 STPVMASFDETPPLEDVDKAFPKFSPG 260
            ST + ASFDET  L+DVDK F  F+ G
Sbjct:  485 STTITASFDETTTLDDVDKLFKVFASG 511          
BLAST of EY665503 vs. ExPASy Swiss-Prot
Match: GCSP_FLATR (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria trinervia GN=GDCSPA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.283e-19
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 1
Query:    1 TIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNL 165
            TIA+RVHGLAGTFA GLKKLGTV+VQ LPFFDTVKV CAD+ AIA  AYK +MNL
Sbjct:  422 TIAKRVHGLAGTFAAGLKKLGTVQVQDLPFFDTVKVTCADSKAIAEEAYKHKMNL 476          

HSP 2 Score: 26.5646 bits (57), Expect = 5.283e-19
Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 3
Query:  189 VMASFDETPPLEDVDKAFPKFSPG 260
            +  +FDET  +EDVD  F  F+ G
Sbjct:  484 ITVAFDETTTIEDVDTLFKVFALG 507          
BLAST of EY665503 vs. ExPASy Swiss-Prot
Match: GCSP_SOLTU (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Solanum tuberosum GN=GDCSP PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.283e-19
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 1
Query:    1 TIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNL 165
            TI QRVHGLAGTF+ GLKKLGTVEVQ LPFFDTVKVKC+DA AIA  A K ++NL
Sbjct:  423 TIGQRVHGLAGTFSAGLKKLGTVEVQDLPFFDTVKVKCSDAKAIADVANKNDINL 477          

HSP 2 Score: 28.4906 bits (62), Expect = 5.283e-19
Identity = 13/24 (54.17%), Postives = 15/24 (62.50%), Query Frame = 3
Query:  189 VMASFDETPPLEDVDKAFPKFSPG 260
            +  SFDET  LEDVD  F  F+ G
Sbjct:  485 ITVSFDETTTLEDVDDLFKVFALG 508          
BLAST of EY665503 vs. ExPASy Swiss-Prot
Match: GCSPB_FLAPR (Glycine dehydrogenase [decarboxylating] B, mitochondrial OS=Flaveria pringlei GN=GDCSPB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.870e-19
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 1
Query:    1 TIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNL 165
            TIA+RVHGLAGTFA GLKKLGTV+VQ LPFFDTVKV CAD+ AIA  AYK +MNL
Sbjct:  422 TIAKRVHGLAGTFASGLKKLGTVQVQDLPFFDTVKVTCADSKAIAEEAYKHKMNL 476          

HSP 2 Score: 26.5646 bits (57), Expect = 6.870e-19
Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 3
Query:  189 VMASFDETPPLEDVDKAFPKFSPG 260
            +  +FDET  +EDVD  F  F+ G
Sbjct:  484 ITVAFDETTTIEDVDTLFKVFALG 507          
BLAST of EY665503 vs. ExPASy Swiss-Prot
Match: GCSPA_FLAPR (Glycine dehydrogenase [decarboxylating] A, mitochondrial OS=Flaveria pringlei GN=GDCSPA PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.510e-18
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 1
Query:    1 TIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNL 165
            TIA+RVHGLAGTFA GLKKLGTV+VQ LPFFDTVKV C D+ AIA  AYK +MNL
Sbjct:  425 TIAKRVHGLAGTFAAGLKKLGTVQVQDLPFFDTVKVTCVDSKAIAEEAYKHKMNL 479          

HSP 2 Score: 26.5646 bits (57), Expect = 1.510e-18
Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 3
Query:  189 VMASFDETPPLEDVDKAFPKFSPG 260
            +  +FDET  +EDVD  F  F+ G
Sbjct:  487 ITVAFDETTTIEDVDTLFKVFALG 510          
BLAST of EY665503 vs. ExPASy Swiss-Prot
Match: GCSP1_ARATH (Glycine dehydrogenase [decarboxylating] 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSP PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.610e-18
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 1
Query:    1 TIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNL 165
            +IAQRVHGLAG FALGLKKLGT +VQ LPFFDTVKV C+DA AI   A K E+NL
Sbjct:  432 SIAQRVHGLAGVFALGLKKLGTAQVQDLPFFDTVKVTCSDATAIFDVAAKKEINL 486          

HSP 2 Score: 30.4166 bits (67), Expect = 5.610e-18
Identity = 13/27 (48.15%), Postives = 17/27 (62.96%), Query Frame = 3
Query:  180 STPVMASFDETPPLEDVDKAFPKFSPG 260
            S  +  +FDET  L+DVDK F  F+ G
Sbjct:  491 SNTITVAFDETTTLDDVDKLFEVFASG 517          
BLAST of EY665503 vs. ExPASy Swiss-Prot
Match: GCSP_FLAAN (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria anomala GN=GDCSP PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.611e-18
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 1
Query:    1 TIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNL 165
            TIA+RVHGLAGTFA GLKKLGTV+VQ LPFFDTVKV CAD+ AIA  A K +MNL
Sbjct:  422 TIAKRVHGLAGTFAAGLKKLGTVQVQDLPFFDTVKVTCADSKAIAEEACKHKMNL 476          

HSP 2 Score: 26.5646 bits (57), Expect = 5.611e-18
Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 3
Query:  189 VMASFDETPPLEDVDKAFPKFSPG 260
            +  +FDET  +EDVD  F  F+ G
Sbjct:  484 ITVAFDETTTIEDVDTLFKVFALG 507          
BLAST of EY665503 vs. ExPASy Swiss-Prot
Match: GCSP_PEA (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Pisum sativum GN=GDCSP PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.574e-17
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 1
Query:    4 IAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNL 165
            IAQRVHGLAG FALGLKKLG +EVQ L FFDTVKVK ++A AIA AA K E+NL
Sbjct:  446 IAQRVHGLAGVFALGLKKLG-LEVQDLGFFDTVKVKTSNAKAIADAAIKSEINL 498          

HSP 2 Score: 34.6538 bits (78), Expect = 4.574e-17
Identity = 18/29 (62.07%), Postives = 21/29 (72.41%), Query Frame = 3
Query:  189 VMASFDETPPLEDVDKAFPKFSPGGKSVS 275
            + A+FDET  LEDVDK F  F+ GGK VS
Sbjct:  506 ITAAFDETTTLEDVDKLFKVFA-GGKPVS 533          
The following BLAST results are available for this feature:
BLAST of EY665503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
GCSP2_ARATH6.066e-2176.36Glycine dehydrogenase [decarboxylating] 2, mitocho... [more]
GCSP_FLATR5.283e-1980.00Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_SOLTU5.283e-1978.18Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSPB_FLAPR6.870e-1980.00Glycine dehydrogenase [decarboxylating] B, mitocho... [more]
GCSPA_FLAPR1.510e-1878.18Glycine dehydrogenase [decarboxylating] A, mitocho... [more]
GCSP1_ARATH5.610e-1874.55Glycine dehydrogenase [decarboxylating] 1, mitocho... [more]
GCSP_FLAAN5.611e-1878.18Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_PEA4.574e-1775.93Glycine dehydrogenase [decarboxylating], mitochond... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-001-A05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665503 ID=EY665503; Name=EY665503; organism=Citrus sinensis; type=EST; length=535bp
ACCATTGCTCAAAGAGTCCATGGACTAGCCGGGACTTTCGCCCTTGGGTT
AAAAAAGCTGGGGACAGTGGAAGTCCAGGGGCTTCCCTTCTTTGACACTG
TGAAGGTGAAGTGTGCGGATGCACATGCCATTGCCAGTGCTGCTTACAAG
ATTGAAATGAATCTTCCGGGTTGTAGATTTCAACACCCGTCATGGCTTCC
TTTGATGAAACACCACCTTTGGAGGATGTTGATAAAGCTTTTCCTAAGTT
TTCGCCCGGGGGCAAATCAGTTTCCATTTAATGCGTGGATCCCTGGGTGA
AAGAAGGTGAAAACTGGCAATTCCGTCCTGGATATAAATAGGGAGAATCC
GTTAACTTGACAATTCCTGGTGTTTACACAAATACCCACCCCAAAGCCTT
GGATTGGCTATAAAAACATATTATGCTGGTAACAAATACAAAGAGAACTT
CCCCTAATGCCCACAAAAATGGATTCCCCGTTGCGAACACCGGGAACAAA
GAGAAAATTGAAGGCGCAAACACATGTCGATATGT
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