CV886084

Overview
NameCV886084
Unique NameCV886084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886084 vs. ExPASy Swiss-Prot
Match: ARAE3_ARATH (Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g20460 PE=2 SV=2)

HSP 1 Score: 279.641 bits (714), Expect = 1.141e-74
Identity = 130/158 (82.28%), Postives = 144/158 (91.14%), Query Frame = 2
Query:    2 DPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 475
            DPEGRLGEAP+PELREHGRISGACFDAARG+I GL+VKGTDY T DGTCVRDYIDV DLVDAHVKALE+A+P+ VGIYNVGTGKGRSVKEFVEACKKAT  +IKV + PRRPGDYAEVYSDP KI  +LNW+A+YTNLQESLE+AW+WQK+H  GYAS
Sbjct:  253 DPEGRLGEAPKPELREHGRISGACFDAARGVIPGLQVKGTDYKTGDGTCVRDYIDVTDLVDAHVKALEKAKPRNVGIYNVGTGKGRSVKEFVEACKKATGVDIKVDFLPRRPGDYAEVYSDPAKILRDLNWSARYTNLQESLEVAWKWQKTHPHGYAS 410          
BLAST of CV886084 vs. ExPASy Swiss-Prot
Match: ARAE1_ARATH (UDP-arabinose 4-epimerase 1 OS=Arabidopsis thaliana GN=MUR4 PE=1 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.141e-74
Identity = 131/156 (83.97%), Postives = 142/156 (91.03%), Query Frame = 2
Query:    2 DPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 469
            DPEGRLGEAPRPELREHGRISGACFDAARGI+ GL++KGTDY TADGTCVRDYIDV DLVDAHVKAL++A+P+KVGIYNVGTGKG SVKEFVEACKKAT   IK+ Y PRR GDYAEVYSDP+KIR ELNWTAK+TNL+ESLE AWRWQK HR GY
Sbjct:  254 DPEGRLGEAPRPELREHGRISGACFDAARGIMPGLQIKGTDYKTADGTCVRDYIDVTDLVDAHVKALQKAKPRKVGIYNVGTGKGSSVKEFVEACKKATGVEIKIDYLPRRAGDYAEVYSDPSKIRKELNWTAKHTNLKESLETAWRWQKLHRNGY 409          
BLAST of CV886084 vs. ExPASy Swiss-Prot
Match: ARAE3_ORYSJ (Probable UDP-arabinose 4-epimerase 3 OS=Oryza sativa subsp. japonica GN=UEL-3 PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 5.664e-74
Identity = 130/158 (82.28%), Postives = 140/158 (88.61%), Query Frame = 2
Query:    2 DPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 475
            DPEGRLGEAPRPELREHGRISGACFDAA GII GLKVKGTDY T DGTC+RDYIDV DLVDAHVKAL +A+P KVGIYNVGTG+GRSVKEFV+ACKKAT  NIK+ Y  RRPGDYAEVYSDPTKI  ELNWTA+YT+L+ESL +AWRWQKSH  GY S
Sbjct:  248 DPEGRLGEAPRPELREHGRISGACFDAALGIIPGLKVKGTDYPTTDGTCIRDYIDVTDLVDAHVKALNKAEPSKVGIYNVGTGRGRSVKEFVDACKKATGVNIKIEYLSRRPGDYAEVYSDPTKINTELNWTAQYTDLKESLSVAWRWQKSHPRGYGS 405          
BLAST of CV886084 vs. ExPASy Swiss-Prot
Match: ARAE4_ARATH (Putative UDP-arabinose 4-epimerase 4 OS=Arabidopsis thaliana GN=At5g44480 PE=3 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 4.795e-73
Identity = 129/158 (81.65%), Postives = 141/158 (89.24%), Query Frame = 2
Query:    2 DPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 475
            DP GRLGEAPRPELRE GRISGACFDAARG I GL+VKGTDY T+DGTC+RDYIDV DLVDAHVKALE+AQP+KVGIYNVGTGKGRSVKEFVEACKKAT   IKV + PRRPGDYAEVYSDPTKI  +LNWTA++TNLQ+SL++AWRWQK H  GY S
Sbjct:  278 DPGGRLGEAPRPELREQGRISGACFDAARGFIPGLQVKGTDYKTSDGTCIRDYIDVTDLVDAHVKALEKAQPRKVGIYNVGTGKGRSVKEFVEACKKATGVEIKVDFLPRRPGDYAEVYSDPTKILKDLNWTARFTNLQDSLQVAWRWQKIHPHGYNS 435          
BLAST of CV886084 vs. ExPASy Swiss-Prot
Match: ARAE2_ARATH (Putative UDP-arabinose 4-epimerase 2 OS=Arabidopsis thaliana GN=At2g34850 PE=2 SV=3)

HSP 1 Score: 274.248 bits (700), Expect = 4.795e-73
Identity = 130/158 (82.28%), Postives = 141/158 (89.24%), Query Frame = 2
Query:    2 DPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 475
            DPEGRLGEAPRPEL EHGRISGACFDAARGII GL++KGTDY T DGTCVRDYIDV DLVDAHVKALE+A+P+KVGI+NVGTGKG SVKEFVEACKKAT  +IKV Y  RR GDYAEVYSDP KI+ ELNWTAK+TNLQESL++AWRWQK HR GY S
Sbjct:  253 DPEGRLGEAPRPELSEHGRISGACFDAARGIIPGLQIKGTDYKTVDGTCVRDYIDVTDLVDAHVKALEKAKPRKVGIFNVGTGKGSSVKEFVEACKKATGVDIKVDYLERRAGDYAEVYSDPRKIKEELNWTAKHTNLQESLKMAWRWQKLHRSGYGS 410          
BLAST of CV886084 vs. ExPASy Swiss-Prot
Match: ARAE1_ORYSJ (Probable UDP-arabinose 4-epimerase 1 OS=Oryza sativa subsp. japonica GN=UEL-1 PE=2 SV=2)

HSP 1 Score: 268.855 bits (686), Expect = 2.014e-71
Identity = 128/156 (82.05%), Postives = 136/156 (87.18%), Query Frame = 2
Query:    2 DPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 469
            DPEGRLGEAP+PELREHGRISGACFDAA GII GLKVKGTDY T DGTCVRDYIDV DLVDAHVKAL +A+  KVGIYNVGTGKGRSVKEFVEACKKAT  +IKV Y PRRPGDYAEVYSDP KI  ELNWTA++T+L ESL +AW WQK HR GY
Sbjct:  258 DPEGRLGEAPKPELREHGRISGACFDAALGIIPGLKVKGTDYETPDGTCVRDYIDVTDLVDAHVKALNKAERGKVGIYNVGTGKGRSVKEFVEACKKATGVDIKVDYFPRRPGDYAEVYSDPAKINSELNWTAQHTDLLESLRVAWTWQKKHRSGY 413          
BLAST of CV886084 vs. ExPASy Swiss-Prot
Match: ARAE2_ORYSJ (Probable UDP-arabinose 4-epimerase 2 OS=Oryza sativa subsp. japonica GN=UEL-2 PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.227e-70
Identity = 126/158 (79.75%), Postives = 138/158 (87.34%), Query Frame = 2
Query:    2 DPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 475
            DP GRLGEAPRPELREHGRISGACFDAA GII GLKV+GTDY TADGTC+RDYIDV DLVDAHVKAL++AQP KVGIYNVGTG GRSVKEFVEACK AT A+IKV +  RRPGDYAEVYSDP+KI  ELNWTA+Y +L+ESL  AW+WQK+H  GY S
Sbjct:  233 DPGGRLGEAPRPELREHGRISGACFDAALGIIPGLKVRGTDYPTADGTCIRDYIDVTDLVDAHVKALDKAQPGKVGIYNVGTGHGRSVKEFVEACKSATGASIKVSFLTRRPGDYAEVYSDPSKIHDELNWTARYIDLRESLSTAWKWQKAHPNGYGS 390          
BLAST of CV886084 vs. ExPASy Swiss-Prot
Match: GALE_BACHD (UDP-glucose 4-epimerase OS=Bacillus halodurans GN=galE PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.850e-25
Identity = 62/159 (38.99%), Postives = 84/159 (52.83%), Query Frame = 2
Query:    2 DPEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPK-KVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 475
            DP GR+GE   PE      +       A G    + + G DY T DG+C+RDYI V DL +AH  A E  +   + G +N+G GKG SVKE +E C++ T   I     PRR GD A + +   K +  L W  KY +L+  +E AW W K H  GY++
Sbjct:  174 DPNGRIGEDHSPE----SHLIPIVLQVALGQRERVAIFGDDYQTEDGSCIRDYIHVMDLANAHYLACEHLRKDGQSGSFNLGNGKGFSVKEVIEVCRQVTGHPIPAEIAPRRSGDPASLIASSEKAQTILGWEPKYPSLETMVEHAWNWHKEHPHGYST 328          
BLAST of CV886084 vs. ExPASy Swiss-Prot
Match: GALE_BACSU (UDP-glucose 4-epimerase OS=Bacillus subtilis GN=galE PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.293e-25
Identity = 67/158 (42.41%), Postives = 84/158 (53.16%), Query Frame = 2
Query:    5 PEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERA-QPKKVGIYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGYAS 475
            P GR+GE P         +       A G +  L V G DY T DGT VRDYI V DL + HVKALE+         YN+GTG G SV E V+A +K +   +   +  RRPGD A  ++DP K + EL W AK   L+E    +WRWQ S+  GY S
Sbjct:  184 PSGRIGEDPNGI---PNNLMPYVAQVAVGKLEQLSVFGNDYPTKDGTGVRDYIHVVDLAEGHVKALEKVLNSTGADAYNLGTGTGYSVLEMVKAFEKVSGKEVPYRFADRRPGDIATCFADPAKAKRELGWEAK-RGLEEMCADSWRWQSSNVNGYKS 337          
BLAST of CV886084 vs. ExPASy Swiss-Prot
Match: GALE2_CYATE (UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetragonoloba PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.116e-24
Identity = 65/157 (41.40%), Postives = 83/157 (52.87%), Query Frame = 2
Query:    5 PEGRLGEAPRPELREHGRISGACFDAARGIIAGLKVKGTDYSTADGTCVRDYIDVNDLVDAHVKALERAQPKKVG--IYNVGTGKGRSVKEFVEACKKATSANIKVIYEPRRPGDYAEVYSDPTKIRLELNWTAKYTNLQESLEIAWRWQKSHRGGY 469
            P G +GE PR        +       A G    L V G DY+T+DGT VRDYI V DL D H+ AL +    K+G  +YN+GTGKG SV E V+A ++A+   I ++   RRPGD   VY+   K   ELNW AKY  + E     W W   +  GY
Sbjct:  190 PSGYIGEDPRGI---PNNLMPFVQQVAVGRRPALTVFGNDYTTSDGTGVRDYIHVVDLADGHIAALRKLNDPKIGCEVYNLGTGKGTSVLEMVKAFEQASGKKIPLVMAGRRPGDAEVVYASTNKAERELNWKAKY-GIDEMCRDQWNWASKNPYGY 342          
The following BLAST results are available for this feature:
BLAST of CV886084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
ARAE3_ARATH1.141e-7482.28Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsi... [more]
ARAE1_ARATH1.141e-7483.97UDP-arabinose 4-epimerase 1 OS=Arabidopsis thalian... [more]
ARAE3_ORYSJ5.664e-7482.28Probable UDP-arabinose 4-epimerase 3 OS=Oryza sati... [more]
ARAE4_ARATH4.795e-7381.65Putative UDP-arabinose 4-epimerase 4 OS=Arabidopsi... [more]
ARAE2_ARATH4.795e-7382.28Putative UDP-arabinose 4-epimerase 2 OS=Arabidopsi... [more]
ARAE1_ORYSJ2.014e-7182.05Probable UDP-arabinose 4-epimerase 1 OS=Oryza sati... [more]
ARAE2_ORYSJ2.227e-7079.75Probable UDP-arabinose 4-epimerase 2 OS=Oryza sati... [more]
GALE_BACHD2.850e-2538.99UDP-glucose 4-epimerase OS=Bacillus halodurans GN=... [more]
GALE_BACSU8.293e-2542.41UDP-glucose 4-epimerase OS=Bacillus subtilis GN=ga... [more]
GALE2_CYATE4.116e-2441.40UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetrag... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_020H05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_020_T3_H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886084 ID=CV886084; Name=CV886084; organism=Citrus sinensis; type=EST; length=726bp
TGATCCAGAGGGTAGATTAGGTGAAGCTCCCAGACCTGAATTGCGTGAGC
ATGGGCGAATATCAGGTGCATGTTTTGATGCAGCTCGTGGTATTATTGCT
GGGCTGAAGGTCAAAGGAACAGACTACAGTACAGCAGATGGAACTTGTGT
TCGTGATTATATTGACGTCAATGATCTGGTTGATGCTCATGTCAAAGCTC
TTGAGAGGGCACAACCTAAGAAAGTTGGAATCTATAATGTTGGCACGGGA
AAAGGGAGATCGGTAAAGGAGTTTGTTGAGGCATGTAAAAAAGCAACATC
GGCAAATATCAAAGTTATATATGAACCTCGCCGCCCAGGTGACTATGCTG
AAGTGTATAGTGACCCGACCAAGATCAGGCTTGAACTGAACTGGACTGCT
AAATACACTAATCTCCAAGAAAGCTTAGAAATCGCTTGGAGATGGCAGAA
GTCTCATCGTGGTGGGTATGCATCGATCATATAGGGAACTTATTTTATAG
CCATTAATGTAATAGACAACGGAGGCAGGCCCCCCGGCAGCCACAGTTAG
AATAGGGGTGAAATTGAGAGTAGATTATTTCTTTATTGATCATATATTGT
GGTCTAGCTTTAGAGAGGACCCCGCATTGTTCAATGTATTTGAACAGATG
ATAATAGCTCAATAATTATGATATGCCCTGGTGGCTGGTGCAGCTATGCA
CCTTTCATTCAAAAAAAAAAAAAAAA
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