FC871885

Overview
NameFC871885
Unique NameFC871885
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length314
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6578 contig Csv1_Contig6578:144..457. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871885 vs. ExPASy Swiss-Prot
Match: MDHG_CUCSA (Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.358e-14
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 1
Query:    1 TELPFFASKVRLERAGIDEIYSLGPLNEYERAGLDRLRK 117
            TELPFFA+KVRL R GIDE+YSLGPLNEYER GL++ +K
Sbjct:  303 TELPFFATKVRLGRNGIDEVYSLGPLNEYERIGLEKAKK 341          

HSP 2 Score: 32.3426 bits (72), Expect = 1.358e-14
Identity = 14/18 (77.78%), Postives = 17/18 (94.44%), Query Frame = 3
Query:  105 QAKKELAGSIQNGVSFVR 158
            +AKKELAGSI+ GVSF+R
Sbjct:  338 KAKKELAGSIEKGVSFIR 355          
BLAST of FC871885 vs. ExPASy Swiss-Prot
Match: MDHG_CITLA (Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.765e-14
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 1
Query:    1 TELPFFASKVRLERAGIDEIYSLGPLNEYERAGLDRLRK 117
            TELPFFASKVRL R GI+E+YSLGPLNEYER GL++ +K
Sbjct:  303 TELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKK 341          

HSP 2 Score: 32.3426 bits (72), Expect = 1.765e-14
Identity = 14/18 (77.78%), Postives = 17/18 (94.44%), Query Frame = 3
Query:  105 QAKKELAGSIQNGVSFVR 158
            +AKKELAGSI+ GVSF+R
Sbjct:  338 KAKKELAGSIEKGVSFIR 355          
BLAST of FC871885 vs. ExPASy Swiss-Prot
Match: MDHG_SOYBN (Malate dehydrogenase, glyoxysomal OS=Glycine max PE=2 SV=2)

HSP 1 Score: 58.151 bits (139), Expect = 5.562e-12
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 1
Query:    1 TELPFFASKVRLERAGIDEIYSLGPLNEYERAGLDRLRK 117
            TELPFFASKVRL R G++EI  LGPLN+YER  L++ +K
Sbjct:  300 TELPFFASKVRLGRVGVEEILPLGPLNDYERESLEKAKK 338          

HSP 2 Score: 31.5722 bits (70), Expect = 5.562e-12
Identity = 13/19 (68.42%), Postives = 17/19 (89.47%), Query Frame = 3
Query:  105 QAKKELAGSIQNGVSFVRK 161
            +AKKELA SI+ G+SF+RK
Sbjct:  335 KAKKELAASIEKGISFIRK 353          
BLAST of FC871885 vs. ExPASy Swiss-Prot
Match: MDHG2_BRANA (Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.217e-11
Identity = 24/39 (61.54%), Postives = 32/39 (82.05%), Query Frame = 1
Query:    1 TELPFFASKVRLERAGIDEIYSLGPLNEYERAGLDRLRK 117
            TEL FFA+KVRL R G +E++ LGPLNEYER GL++ ++
Sbjct:  305 TELAFFATKVRLGRTGAEEVFQLGPLNEYERVGLEKAKE 343          

HSP 2 Score: 32.3426 bits (72), Expect = 1.217e-11
Identity = 14/19 (73.68%), Postives = 17/19 (89.47%), Query Frame = 3
Query:  105 QAKKELAGSIQNGVSFVRK 161
            +AK+ELAGSIQ GV F+RK
Sbjct:  340 KAKEELAGSIQKGVDFIRK 358          
BLAST of FC871885 vs. ExPASy Swiss-Prot
Match: MDHG1_BRANA (Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2)

HSP 1 Score: 56.225 bits (134), Expect = 1.217e-11
Identity = 24/39 (61.54%), Postives = 32/39 (82.05%), Query Frame = 1
Query:    1 TELPFFASKVRLERAGIDEIYSLGPLNEYERAGLDRLRK 117
            TEL FFA+KVRL R G +E++ LGPLNEYER GL++ ++
Sbjct:  305 TELAFFATKVRLGRTGAEEVFQLGPLNEYERVGLEKAKE 343          

HSP 2 Score: 32.3426 bits (72), Expect = 1.217e-11
Identity = 14/19 (73.68%), Postives = 17/19 (89.47%), Query Frame = 3
Query:  105 QAKKELAGSIQNGVSFVRK 161
            +AK+ELAGSIQ GV F+RK
Sbjct:  340 KAKEELAGSIQKGVDFIRK 358          
BLAST of FC871885 vs. ExPASy Swiss-Prot
Match: MDHG1_ARATH (Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 1.217e-11
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 1
Query:    1 TELPFFASKVRLERAGIDEIYSLGPLNEYERAGLDRLR 114
            TEL FFA+KVRL R G +E+Y LGPLNEYER GL++ +
Sbjct:  301 TELAFFATKVRLGRTGAEEVYQLGPLNEYERIGLEKAK 338          

HSP 2 Score: 31.5722 bits (70), Expect = 1.217e-11
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 3
Query:  105 QAKKELAGSIQNGVSFVRK 161
            +AK ELAGSIQ GV F+RK
Sbjct:  336 KAKDELAGSIQKGVEFIRK 354          
BLAST of FC871885 vs. ExPASy Swiss-Prot
Match: MDHG2_ARATH (Probable malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At2g22780 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.345e-11
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 1
Query:    1 TELPFFASKVRLERAGIDEIYSLGPLNEYERAGLDRLRK 117
            TELPFFASKVRL R GIDE+Y LGPLNEYER GL++ +K
Sbjct:  301 TELPFFASKVRLGRCGIDEVYGLGPLNEYERMGLEKAKK 339          
The following BLAST results are available for this feature:
BLAST of FC871885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
MDHG_CUCSA1.358e-1476.92Malate dehydrogenase, glyoxysomal OS=Cucumis sativ... [more]
MDHG_CITLA1.765e-1476.92Malate dehydrogenase, glyoxysomal OS=Citrullus lan... [more]
MDHG_SOYBN5.562e-1266.67Malate dehydrogenase, glyoxysomal OS=Glycine max P... [more]
MDHG2_BRANA1.217e-1161.54Malate dehydrogenase 2, glyoxysomal OS=Brassica na... [more]
MDHG1_BRANA1.217e-1161.54Malate dehydrogenase 1, glyoxysomal OS=Brassica na... [more]
MDHG1_ARATH1.217e-1165.79Malate dehydrogenase, glyoxysomal OS=Arabidopsis t... [more]
MDHG2_ARATH4.345e-1176.92Probable malate dehydrogenase, glyoxysomal OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK1DG05FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1DG05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871885 ID=FC871885; Name=FC871885; organism=Citrus sinensis; type=EST; length=314bp
ACTGAACTCCCTTTCTTTGCATCCAAGGTACGGCTTGAACGAGCTGGAAT
TGATGAAATTTACTCACTTGGCCCGTTGAATGAGTATGAGAGGGCTGGTT
TGGACAGGCTAAGAAAGAGTTAGCGGGAAGCATTCAAAATGGAGTCAGCT
TTGTCAGGAAATGAGTAACCTGTCCCATGGTGACTAATGATGATGGTTGT
GCTTTTGTTGTTTGCCTCAAATATCTCAAGATTACTTTCCCCAGAGTAAG
AGGTAGGGTTTTCGTTTTTCCATAATCAGATGGAATTAAGTTAATTACAA
AGAAGAAGCAGAAG
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