EY665489

Overview
NameEY665489
Unique NameEY665489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665489 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.615e-84
Identity = 165/228 (72.37%), Postives = 186/228 (81.58%), Query Frame = 3
Query:   57 PLSFNGFGAATS-VPSSSFFGTSLKKVGSRIPPSKVPSASFKITA-EVDENKQTKKDRWKGLAYDESDDQQDITIGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLLNIKVPLILGIWGGQGQRKSFQCGLVFAKMGINPIMMNAGKLESCNAGKNPANLIRQKVREAPEIIKKGKRCRLQITDLECRNLAEGG 734
            PLS NG GA  S VPS++FFG+SLKK  ++ P  K  S +FKI A E+ E++QT KD+WKGLAYD SDDQQDIT GKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNLDN MDG YIAPAFMDKLVVHITKNF+SL NIK+PLILGIWGG+GQ KSFQC LVFAKMGINPIMM+AG+LES NAG+ PA LIRQ+ REA +IIKKGK C L I DL+      GG
Sbjct:   15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE-PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 239          
BLAST of EY665489 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.615e-84
Identity = 165/228 (72.37%), Postives = 186/228 (81.58%), Query Frame = 3
Query:   57 PLSFNGFGAATS-VPSSSFFGTSLKKVGSRIPPSKVPSASFKITA-EVDENKQTKKDRWKGLAYDESDDQQDITIGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLLNIKVPLILGIWGGQGQRKSFQCGLVFAKMGINPIMMNAGKLESCNAGKNPANLIRQKVREAPEIIKKGKRCRLQITDLECRNLAEGG 734
            PLS NG GA  S VPS++FFG+SLKK  ++ P  K  S +FKI A E+ E++QT KD+WKGLAYD SDDQQDIT GKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNLDN MDG YIAPAFMDKLVVHITKNF+SL NIK+PLILGIWGG+GQ KSFQC LVFAKMGINPIMM+AG+LES NAG+ PA LIRQ+ REA +IIKKGK C L I DL+      GG
Sbjct:   15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE-PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 239          
BLAST of EY665489 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 3.597e-84
Identity = 157/218 (72.02%), Postives = 180/218 (82.57%), Query Frame = 3
Query:   57 PLSFNGFGAATSVPSSSFFGTSLKKVGSRIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITIGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLLNIKVPLILGIWGGQGQRKSFQCGLVFAKMGINPIMMNAGKLESCNAGKNPANLIRQKVREAPEIIKKGKRCRLQITDLE 710
            P + NG  ++ SVPSS+F G+SLKKV SR   SKV S S +I A VDE+KQT KDRWKGLA+D SDDQQDIT GKG VDSLFQAP G+GTH+A+MSSY+YIS GLR YN DN MDG YIAPAFMDKLVVHITKNFM+L N+KVPLILGIWGG+GQ KSFQC LVFAKM I+PIMM+AG+LES NAG+ PA LIRQ+ REA +II+KGK C L I DL+
Sbjct:   15 PPNLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVFAKMRISPIMMSAGELESGNAGE-PAKLIRQRYREAADIIRKGKMCALFINDLD 231          
BLAST of EY665489 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 302.753 bits (774), Expect = 1.671e-81
Identity = 159/221 (71.95%), Postives = 180/221 (81.45%), Query Frame = 3
Query:   60 LSFNGFGAATSVPSSSFFGTSLKK-VGSRIPPSKVPSASFKITA---EVDENKQTKKDRWKGLAYDESDDQQDITIGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLLNIKVPLILGIWGGQGQRKSFQCGLVFAKMGINPIMMNAGKLESCNAGKNPANLIRQKVREAPEIIKKGKRCRLQITDLE 710
            L+ NG GA  S P+S+FFGTSLKK V SR+P SKV + SFKI A   E++E++QT KDRWKGLAYD SDDQQDIT GKG VD LFQAPM  GTHYAVMSSY+Y+S GLR   LDN  DG YIAPAF+DKLVVHITKNFM+L NIKVPLILGIWGG+GQ KSFQC LVFAKMGINPIMM+AG+LES NAG+ PA LIRQ+ REA ++I KGK C L I DL+
Sbjct:   16 LNLNGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLR--QLDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE-PAKLIRQRYREAADLIAKGKMCALFINDLD 233          
BLAST of EY665489 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 2.182e-81
Identity = 156/221 (70.59%), Postives = 179/221 (81.00%), Query Frame = 3
Query:   60 LSFNGFGAATSVPSSSFFGTSLKKV-GSRIPPSKVPSASFKITA---EVDENKQTKKDRWKGLAYDESDDQQDITIGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLLNIKVPLILGIWGGQGQRKSFQCGLVFAKMGINPIMMNAGKLESCNAGKNPANLIRQKVREAPEIIKKGKRCRLQITDLE 710
            L+ NG G   S PSS+FFGTSLKKV  SR+P SK+ S SFKI A   E++E +QT+ DRW+GLAYD SDDQQDIT GKG VDSLFQAPM  GTHYAV+SS+ Y+S GLR YN DN  DG YIAPAF+DKLVVHI KNFM+L NIKVPLILG+WGG+GQ KSFQC LVFAKMGINPIMM+AG+LES NAG+ PA LIRQ+ REA ++IKKGK C L I DL+
Sbjct:   16 LNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE-PAKLIRQRYREASDLIKKGKMCVLFINDLD 235          
BLAST of EY665489 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 2.043e-79
Identity = 157/230 (68.26%), Postives = 176/230 (76.52%), Query Frame = 3
Query:   57 PLSFNGFGAATSVPSSSFFGTSLKKV-GSRIPPSKVPSASFKITAE---VDENKQTKKDRWKGLAYDESDDQQDITIGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLLNIKVPLILGIWGGQGQRKSFQCGLVFAKMGINPIMMNAGKLESCNAGKNPANLIRQKVREAPEIIKKGKRCRLQITDLECRNLAEGG 734
            PLS N   A TSVPS++FFG +LKKV G  +   KV + S +I AE   VD  KQT  DRWKGL  D SDDQQDIT GKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+ L NIKVPLILGIWGG+GQ KSFQC LVF KMGINPIMM+AG+LES NAG+ PA LIRQ+ REA EII+KG  C L I DL+      GG
Sbjct:   15 PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVAEQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGE-PAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGG 243          
BLAST of EY665489 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 294.278 bits (752), Expect = 5.943e-79
Identity = 159/241 (65.98%), Postives = 183/241 (75.93%), Query Frame = 3
Query:   42 MAAAV---------PLSFNGFGA-ATSVPSSSFFGTSLKKVGSRIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITIGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLLNIKVPLILGIWGGQGQRKSFQCGLVFAKMGINPIMMNAGKLESCNAGKNPANLIRQKVREAPEIIKKGKRCRLQITDLECRNLAEGG 734
            MAAAV         PLS NG G+ A S P+S+F G  +  V      +K  + SFK+ A V E+KQT  DRW+GLAYD SDDQQDIT GKG VDS+FQAPMGTGTH+AV+SSY+Y+SQGLR YNLDN MDG YIAPAFMDKLVVHITKNF++L NIKVPLILGIWGG+GQ KSFQC LV AKMGINPIMM+AG+LES NAG+ PA LIRQ+ REA ++IKKGK C L I DL+      GG
Sbjct:    1 MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA-VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGE-PAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGG 239          
BLAST of EY665489 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 3.852e-78
Identity = 154/234 (65.81%), Postives = 176/234 (75.21%), Query Frame = 3
Query:   45 AAAVPLSFNGFGAATSVPSSSFFGTSLKKV-GSRIPPSKVPSASFKITAE---VDENKQTKKDRWKGLAYDESDDQQDITIGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLLNIKVPLILGIWGGQGQRKSFQCGLVFAKMGINPIMMNAGKLESCNAGKNPANLIRQKVREAPEIIKKGKRCRLQITDLECRNLAEGG 734
            A   PLS N   A TSVPS++FFG +LKKV G  +   KV + S +I AE    D  KQT  DRWKGL  D SDDQQDI  GKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YN+DNT+DG YIAP+FMDKLVVHITKNF+ L NIKVPLILG+WGG+GQ KSFQC LVF KMGINPIMM+AG+LES NAG+ PA LIRQ+ REA EII+KG  C L I DL+      GG
Sbjct:   11 ANKAPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGE-PAKLIRQRYREAAEIIRKGNICCLFINDLDAGAGRMGG 243          
BLAST of EY665489 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 9.488e-77
Identity = 145/206 (70.39%), Postives = 169/206 (82.04%), Query Frame = 3
Query:   93 VPSSSFFGTSLKKVGSRIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITIGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLLNIKVPLILGIWGGQGQRKSFQCGLVFAKMGINPIMMNAGKLESCNAGKNPANLIRQKVREAPEIIKKGKRCRLQITDLE 710
            VP+S+F G+ LK V SR   SK+ + +FKI AE DE KQT+KD+W+GLA+D SDDQQDIT GKG  D LFQAPMGTGTH AV+SSY+YIS GLR Y+ DN +DG YIAPAFMDKL VHI KNF++L NIKVPLILG+WGG+GQ KSFQC LVFAKMGINPIMM+AG+LES NAG+ PA LIRQ+ REA +IIKKGK C L I DL+
Sbjct:   25 VPNSAFLGSRLK-VSSRFTTSKMVTGNFKIVAEQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE-PAKLIRQRYREAADIIKKGKMCCLFINDLD 228          
BLAST of EY665489 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 3.605e-76
Identity = 151/232 (65.09%), Postives = 180/232 (77.59%), Query Frame = 3
Query:   45 AAAVPLSFNGFGAATSVPSSSFFGTSLKKVGSR-IPPSKVPSASFKITA-EVDENKQTKKDRWKGLAYDESDDQQDITIGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLLNIKVPLILGIWGGQGQRKSFQCGLVFAKMGINPIMMNAGKLESCNAGKNPANLIRQKVREAPEIIKKGKRCRLQITDLECRNLAEGG 734
            A+  PLS N   A TSVPS++FFG SLKKV ++ +   KV + + ++ A EVDE   TK+DRWKGL  + SDDQQDI  GKG VDSLFQAP GTGTH+A+M+SY+Y+SQ L+TY LDN +DG YIAPAFMDKLVVHITKNF++L NIKVPLILG+WGG+GQ KSFQC LVF KMGINPIMM+AG+LES NAG+ PA LIRQ+ REA EII+KG  C L I DL+      GG
Sbjct:   11 ASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVAQEVDE---TKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGE-PAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGG 238          
The following BLAST results are available for this feature:
BLAST of EY665489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA2_LARTR1.615e-8472.37Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR1.615e-8472.37Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO3.597e-8472.02Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU1.671e-8171.95Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU2.182e-8170.59Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC2.043e-7968.26Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH5.943e-7965.98Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC3.852e-7865.81Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA9.488e-7770.39Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN3.605e-7665.09Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-G06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665489 ID=EY665489; Name=EY665489; organism=Citrus sinensis; type=EST; length=862bp
CCACGCGTCCGAATCACAGCCGTCCAATTCCCCCTTTACTAATGGCTGCT
GCTGTACCGCTGAGCTTCAATGGCTTTGGTGCTGCAACCTCTGTCCCAAG
CTCATCTTTCTTTGGCACCAGCTTGAAGAAGGTAGGGTCAAGGATCCCCC
CATCCAAGGTCCCTTCTGCGAGCTTCAAGATTACTGCTGAAGTCGATGAG
AACAAGCAGACCAAGAAGGACAGATGGAAGGGCCTTGCCTACGACGAATC
TGATGACCAGCAAGACATCACCATAGGAAAAGGTGCTGTGGACTCTCTGT
TCCAAGCCCCCATGGGAACCGGAACTCACTATGCTGTCATGAGTTCTTAT
GACTACATCAGCCAAGGTCTCCGCACATACAACTTGGACAACACGATGGA
CGGTCTCTACATTGCCCCTGCTTTCATGGACAAGCTTGTTGTTCACATCA
CCAAGAACTTCATGTCCCTGCTCAACATCAAGGTTCCTCTCATCTTGGGT
ATATGGGGAGGGCAAGGGCAAAGAAAATCATTCCAATGTGGACTTGTTTT
CGCCAAGATGGGCATCAACCCAATTATGATGAATGCCGGAAAATTGGAAA
GCTGCAATGCTGGGAAAAACCCCGCTAACTTGATCAGGCAAAAGGTACGT
GAAGCACCTGAAATTATCAAAAAGGGAAAAAGGTGCCGCCTCCAGATCAC
TGATCTTGAATGCAGGAACCTGGCCGAAGGGGGGGCCCCCCCCCAAAGCC
CATTAACAACCAAAGGGTTAACCCCCCACCCATGAAACCTGGCTAATAAA
ACCCAACTTGGGTCCCACTCCCCCGGGATTTGTACACCCCAAGGGGGGAA
AAACCCCCCGTG
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