EY665482

Overview
NameEY665482
Unique NameEY665482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665482_ssr173 microsatellite EY665482_ssr173:173..190. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665482 vs. ExPASy Swiss-Prot
Match: COPB1_ORYSJ (Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica GN=Os11g0174000 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.097e-22
Identity = 58/98 (59.18%), Postives = 72/98 (73.47%), Query Frame = 1
Query:  454 QVAVNTVIQDEKEFLDLIIKSTHMKCLTAPSALDGDCGVLATNLYATSGFGEDALGNVSLGKETRREAQWGTSK*RTRTQGMPLVWGKRTTSSGREGS 747
            +VAVNTVIQDEKEFLD IIKST+MKCLT PSALDG+CG +A NLYA S FGEDAL N+S+ K+   +   G  + R++TQG+ L  G + T   + GS
Sbjct:  856 KVAVNTVIQDEKEFLDHIIKSTNMKCLTPPSALDGECGFIAANLYAKSVFGEDALVNISVEKQADGKLS-GYIRIRSKTQGIALSLGDKITLKQKGGS 952          
BLAST of EY665482 vs. ExPASy Swiss-Prot
Match: COPB2_ORYSJ (Coatomer subunit beta-2 OS=Oryza sativa subsp. japonica GN=Os01g0281400 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.192e-22
Identity = 58/98 (59.18%), Postives = 72/98 (73.47%), Query Frame = 1
Query:  454 QVAVNTVIQDEKEFLDLIIKSTHMKCLTAPSALDGDCGVLATNLYATSGFGEDALGNVSLGKETRREAQWGTSK*RTRTQGMPLVWGKRTTSSGREGS 747
            +VAVNTVIQ+EKEFLD IIKST+MKCLT PSALDG+CG LA NLYA S FGEDAL N+S+ K+   +   G  + R++TQG+ L  G + T   + GS
Sbjct:  854 KVAVNTVIQNEKEFLDHIIKSTNMKCLTPPSALDGECGFLAANLYAKSVFGEDALVNISIEKQFDGKLS-GYIRIRSKTQGIALSLGDKITLKQKGGS 950          
BLAST of EY665482 vs. ExPASy Swiss-Prot
Match: COPB1_ARATH (Coatomer subunit beta-1 OS=Arabidopsis thaliana GN=At4g31480 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 2.069e-21
Identity = 56/91 (61.54%), Postives = 70/91 (76.92%), Query Frame = 1
Query:  454 QVAVNTVIQDEKEFLDLIIKSTHMKCLTAPSALDGDCGVLATNLYATSGFGEDALGNVSLGKETRREAQWGTSK*RTRTQGMPLVWGKRTT 726
            +VAVNT IQ+E+EFLD IIKST+MKCLTAPSA++G+CG LA NLYA S FGEDAL NVS+ K+T   A  G  + R++TQG+ L  G + T
Sbjct:  852 KVAVNTTIQNEREFLDHIIKSTNMKCLTAPSAIEGECGFLAANLYAKSVFGEDALVNVSIEKQT-DGALSGYIRIRSKTQGIALSLGDKIT 941          
BLAST of EY665482 vs. ExPASy Swiss-Prot
Match: COPB2_ARATH (Coatomer subunit beta-2 OS=Arabidopsis thaliana GN=At4g31490 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.529e-21
Identity = 56/98 (57.14%), Postives = 71/98 (72.45%), Query Frame = 1
Query:  454 QVAVNTVIQDEKEFLDLIIKSTHMKCLTAPSALDGDCGVLATNLYATSGFGEDALGNVSLGKETRREAQWGTSK*RTRTQGMPLVWGKRTTSSGREGS 747
            +VAVNT IQ+E+EFLD IIKST+MKCLTAPSA+ G+CG LA NLYA S FGEDAL N+S+ K+T      G  + R++TQG+ L  G + T   + GS
Sbjct:  852 KVAVNTTIQNEREFLDHIIKSTNMKCLTAPSAIAGECGFLAANLYAKSVFGEDALVNLSIEKQTDGTLS-GYIRIRSKTQGIALSLGDKITLKQKGGS 948          
BLAST of EY665482 vs. ExPASy Swiss-Prot
Match: COPB_RAT (Coatomer subunit beta OS=Rattus norvegicus GN=Copb1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.449e-14
Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  454 QVAVNTVIQDEKEFLDLIIKSTHMKCLTAPSALDGDCGVLATNLYATSGFGEDALGNVSLGKETRR---EAQWGTSK*RTRTQGMPLVWGKRTTSSGREGS 747
            +V VNT + D  ++L  I+KST+MKCLT   AL G CG +A NLYA S FGEDAL NVS+ K   +    A  G  + R ++QGM L  G +   S ++ S
Sbjct:  852 KVTVNTNVTDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSIEKPVHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQKKTS 952          
BLAST of EY665482 vs. ExPASy Swiss-Prot
Match: COPB_BOVIN (Coatomer subunit beta OS=Bos taurus GN=COPB1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.449e-14
Identity = 46/101 (45.54%), Postives = 62/101 (61.39%), Query Frame = 1
Query:  454 QVAVNTVIQDEKEFLDLIIKSTHMKCLTAPSALDGDCGVLATNLYATSGFGEDALGNVSLGKETRREAQ---WGTSK*RTRTQGMPLVWGKRTTSSGREGS 747
            +V VNT I D  ++L  I+KST+MKCLT   AL G CG +A NLYA S FGEDAL NVS+ K  ++  +    G  + R ++QGM L  G +   S ++ S
Sbjct:  852 KVTVNTNIVDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSIEKPIQQGPEAPVTGHIRIRAKSQGMALSLGDKINLSQKKNS 952          
BLAST of EY665482 vs. ExPASy Swiss-Prot
Match: COPB_MOUSE (Coatomer subunit beta OS=Mus musculus GN=Copb1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.178e-14
Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  454 QVAVNTVIQDEKEFLDLIIKSTHMKCLTAPSALDGDCGVLATNLYATSGFGEDALGNVSLGKETRR---EAQWGTSK*RTRTQGMPLVWGKRTTSSGREGS 747
            +V VNT + D  ++L  I+KST+MKCLT   AL G CG +A NLYA S FGEDAL NVS+ K   +    A  G  + R ++QGM L  G +   S ++ S
Sbjct:  852 KVTVNTNMTDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSIEKPVHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQKKTS 952          
BLAST of EY665482 vs. ExPASy Swiss-Prot
Match: COPB_HUMAN (Coatomer subunit beta OS=Homo sapiens GN=COPB1 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 7.127e-14
Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  454 QVAVNTVIQDEKEFLDLIIKSTHMKCLTAPSALDGDCGVLATNLYATSGFGEDALGNVSLGKETRR---EAQWGTSK*RTRTQGMPLVWGKRTTSSGREGS 747
            +V VNT + D  ++L  I+KST+MKCLT   AL G CG +A NLYA S FGEDAL NVS+ K   +    A  G  + R ++QGM L  G +   S ++ S
Sbjct:  852 KVTVNTNMVDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSIEKPIHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQKKTS 952          
BLAST of EY665482 vs. ExPASy Swiss-Prot
Match: COPB_CHICK (Coatomer subunit beta OS=Gallus gallus GN=COPB1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.127e-14
Identity = 47/101 (46.53%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  454 QVAVNTVIQDEKEFLDLIIKSTHMKCLTAPSALDGDCGVLATNLYATSGFGEDALGNVSLGKETRREAQ---WGTSK*RTRTQGMPLVWGKRTTSSGREGS 747
            +V VNT I D  E+L  I+KST+MKCLT   AL G CG +A NLYA S FGEDAL NVS+ K      +    G  + R ++QGM L  G +   S ++ S
Sbjct:  852 KVTVNTNIIDLNEYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSIEKPIHLGPEAPVTGHIRIRAKSQGMALSLGDKINLSQKKTS 952          
BLAST of EY665482 vs. ExPASy Swiss-Prot
Match: COPB_PONAB (Coatomer subunit beta OS=Pongo abelii GN=COPB1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.588e-13
Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  454 QVAVNTVIQDEKEFLDLIIKSTHMKCLTAPSALDGDCGVLATNLYATSGFGEDALGNVSLGKETRR---EAQWGTSK*RTRTQGMPLVWGKRTTSSGREGS 747
            +V VNT + D  ++L  I+KST+MKCLT   AL G CG +A NLYA S FGEDAL NVS+ K   +    A  G  + R ++QGM L  G +   S ++ S
Sbjct:  852 KVTVNTNMIDLNDYLRHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSIEKPIHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQKKTS 952          
The following BLAST results are available for this feature:
BLAST of EY665482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
COPB1_ORYSJ1.097e-2259.18Coatomer subunit beta-1 OS=Oryza sativa subsp. jap... [more]
COPB2_ORYSJ3.192e-2259.18Coatomer subunit beta-2 OS=Oryza sativa subsp. jap... [more]
COPB1_ARATH2.069e-2161.54Coatomer subunit beta-1 OS=Arabidopsis thaliana GN... [more]
COPB2_ARATH3.529e-2157.14Coatomer subunit beta-2 OS=Arabidopsis thaliana GN... [more]
COPB_RAT2.449e-1445.54Coatomer subunit beta OS=Rattus norvegicus GN=Copb... [more]
COPB_BOVIN2.449e-1445.54Coatomer subunit beta OS=Bos taurus GN=COPB1 PE=2 ... [more]
COPB_MOUSE4.178e-1445.54Coatomer subunit beta OS=Mus musculus GN=Copb1 PE=... [more]
COPB_HUMAN7.127e-1445.54Coatomer subunit beta OS=Homo sapiens GN=COPB1 PE=... [more]
COPB_CHICK7.127e-1446.53Coatomer subunit beta OS=Gallus gallus GN=COPB1 PE... [more]
COPB_PONAB1.588e-1345.54Coatomer subunit beta OS=Pongo abelii GN=COPB1 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-F06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665482 ID=EY665482; Name=EY665482; organism=Citrus sinensis; type=EST; length=891bp
GAGGGGGGGACCGGGGGGCGGGCCGGATTCCGGGTCGACCCCGCGTCCGT
TTTAATTATTTTCAGCCCCCTTGGAAGGGATCTGTTGGAAGGGAAGGTCA
TTGTGGCCCTGATTATGGGACTCAGCAAGAGTTACTATTTCGTCATAACT
TTTTTTCTTTTTCATCTCTGGGATTATTATTATTATTATTAATCAAGTCG
AACATTAACCACCCGAGCAAGCTGTCTGTGGTCTTTCTAACAATCATAGG
TGGTTGTAGCGCGTAAACTCTATGGACCTTCCCAGCTCCTAATATGATGC
CAACTATTTTTTGATTTGATTGTACACTTGTGAATTAATTTCTTCTTTCC
TTTAGTTGCAGTGACTGTTGAAAGTTATTTCCAGTTTGACTGATCACTTA
TCTGTCTTGCTGGTGCTTAGTTTTATGGTTAATTTTATTTGTCTTCTGCT
CTGCAGGTTGCTGTTAACACAGTAATTCAAGATGAGAAGGAATTCCTTGA
TCTTATCATCAAATCAACCCACATGAAGTGCCTCACTGCACCGTCTGCAC
TAGATGGTGATTGTGGGGTCCTGGCAACAAACTTGTACGCCACGAGTGGG
TTTGGGGAGGATGCTTTGGGAAATGTAAGCCTTGGAAAGGAAACCCGAAG
GGAAGCTCAGTGGGGTACATCAAAATAAAGGACAAGAACCCAAGGAATGC
CCTTAGTCTGGGGGAAAAGAACAACCTCAAGCGGAAGGGAGGGCAGTGGA
TTTGGAAACGGAGAATTTCATTATTTTTGGAAAAAAGGGGGGTTGTCCTA
CCAATTAAAAAGAAGGGTGGCCCCTTTTTGGGGGGGCCACGTGTGGCATC
GGGGGGTTGGGGGGCAGTGGCAGTTTTTTATTTGGAAAAGG
back to top