EY665479

Overview
NameEY665479
Unique NameEY665479
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665479_ssr784 microsatellite EY665479_ssr784:784..795. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY665479 vs. ExPASy Swiss-Prot
Match: C3H62_ORYSJ (Zinc finger CCCH domain-containing protein 62 OS=Oryza sativa subsp. japonica GN=Os10g0391300 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 4.076e-22
Identity = 62/135 (45.93%), Postives = 81/135 (60.00%), Query Frame = 3 
Query:  408 GQQEKLKVEQCKVYLRKNGLRLTGNKPTLIQRIKEHLEISNGGGERRYPIFSFVLDCKGDACTGDVVMFEQNVYKTFNIAAWNASGPPWGQKDCCWAAW*KKSYGAAQQQTYI*HKGT---FGAKGKKPLPPFRP 803
            GQ EKLKV +CK YLR + LRL+GNK  L+ RI+  +E+   G E +YP+ SFVL+C+GD+C GDVV+FEQN+YK    A     G   GQ+        K+SYG  +QQ    H  T     ++G KP PP  P
Sbjct:  130 GQLEKLKVYECKAYLRMHKLRLSGNKEVLLTRIRGQIEVKTMG-EVKYPVSSFVLNCQGDSCKGDVVVFEQNIYKRKKGAPRGVKGHLCGQRTNAGRII-KESYGTKKQQ----HTFTIEILWSRGYKPWPPLHP 258
The following BLAST results are available for this feature:
BLAST of EY665479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
C3H62_ORYSJ4.076e-2245.93Zinc finger CCCH domain-containing protein 62 OS=O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-F02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665479 ID=EY665479; Name=EY665479; organism=Citrus sinensis; type=EST; length=881bp
GGGGGGGAAGGGCGGTACGGGTCGGATTCCCGGGTCGACCACGCGTCCGC
GATTTCAAAAGCGAAAGCCCTTTTGTTAGGGTTTTTACCTTAAAAGGTTT
CTGCGGAAGACCTTTATGAATAAATAAAACCAGAAGAAAGCAAAAGAGTA
GCGAATCAATGGCAGCTCCTGAGTCTGAGCAAGTAATATTCATCGAAGAA
GGAGATGATGAATACAGCACCGACAGTGGAGGGTCCGACCTGGGTTATGA
TTCGGATTTAGACCCGAGTTACAGCCCTCTTGAGGACACCCATGCCACCT
TCTCAAAGCTCTCAATTGGGAAAAAGTCCAAGTCTCGTATTGGCAAAGAT
TTGGATGTGGGTGTTGATGAAATTGAAGAAAAAGTAATCCAGAAGATCAT
TGAAGCCGGGCAGCAAGAGAAATTGAAAGTGGAGCAATGTAAAGTTTATT
TGAGGAAGAATGGATTGAGATTGACGGGCAATAAACCCACGCTTATTCAG
CGTATAAAGGAGCATCTAGAAATCTCAAATGGTGGTGGAGAGAGAAGGTA
CCCAATCTTTAGCTTTGTACTGGACTGTAAAGGTGATGCTTGCACAGGCG
ACGTTGTTATGTTTGAACAGAATGTTTACAAAACGTTTAACATAGCAGCT
TGGAATGCAAGTGGGCCCCCCTGGGGGCAAAAGGATTGTTGCTGGGCCGC
ATGGTGAAAGAAAAGCTATGGAGCCGCCCAACAACAAACATACATTTAAC
ATAAAGGTACTTTTGGAGCAAAGGGGAAAAAACCCCTCCCTCCCTTTCGT
CCCTCCTCCTATTTAAAGGTCCAAAACTTTTTTCCTCTGAAAAACTTTTA
AAACAGAAAAGGGGGAAAACCCAAGGGGGAA
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