FC871883

Overview
NameFC871883
Unique NameFC871883
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6576 contig Csv1_Contig6576:2..464. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC871883 vs. ExPASy Swiss-Prot
Match: PUB19_ARATH (U-box domain-containing protein 19 OS=Arabidopsis thaliana GN=PUB19 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.056e-15
Identity = 45/121 (37.19%), Postives = 70/121 (57.85%), Query Frame = 2 
Query:   17 DSLAVLVNLAEDIQGTSTILKTSALPVIIGLL-QTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLKTDGTSHARTKARSLIKILHTFFETCSSGVEGSAAPHERPFHVW 376
            DS+A+L  +AE   G  ++L+   L + + +L  +  S A K++CV++LL+LC N   +V  SLAK+PS+M SLY+  ++G      KA +LIK++H F E   +G        ER  H W
Sbjct:  567 DSMAILAKMAEYPDGMISVLRRGGLKLAVKILGSSEVSPATKQHCVALLLNLCHNGGSDVVGSLAKNPSIMGSLYTASSNGELGGGKKASALIKMIHEFQER-KTGPGEPVLERERFVHAW 686
[Close]
BLAST of FC871883 vs. ExPASy Swiss-Prot
Match: PUB18_ARATH (U-box domain-containing protein 18 OS=Arabidopsis thaliana GN=PUB18 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.867e-11
Identity = 40/125 (32.00%), Postives = 65/125 (52.00%), Query Frame = 2 
Query:    8 LVPDSLAVLVNLAEDIQGTSTILKTSALPVIIGLLQTLTSR--AGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLKTDGTSHARTKARSLIKILHTFFETCSSGVEGSAAPHERPFHVW 376
            L  D LA L  LAE   GT  +++   L + + +L +      A K++CV ++L+LC N   +V   L K+  +M SLY++ ++G      KA +LI+++H F E  +  VE +     R  H W
Sbjct:  574 LTADCLATLAKLAEYPDGTIGVIRRGGLKLAVKILSSSEDSPVAVKQHCVGLILNLCLNGGRDVVGVLVKNSLVMGSLYTVLSNGEYGGSKKASALIRMIHEFQERKTGSVEPN-LQRGRFVHAW 697
The following BLAST results are available for this feature:
BLAST of FC871883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PUB19_ARATH5.056e-1537.19U-box domain-containing protein 19 OS=Arabidopsis ... [more]
PUB18_ARATH9.867e-1132.00U-box domain-containing protein 18 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK1DG02FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1DG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871883 ID=FC871883; Name=FC871883; organism=Citrus sinensis; type=EST; length=463bp
ACCTGACCTAGTACCAGATTCGCTAGCTGTTCTTGTAAATTTAGCTGAGG
ATATTCAAGGAACGTCGACAATTCTGAAGACTTCAGCATTGCCTGTAATT
ATTGGGCTATTGCAAACGTTAACTTCACGAGCTGGGAAAGAGTATTGTGT
CTCAATATTACTCTCTTTATGCAGCAATGCTCGTGAAGAGGTGACTGCAA
GTTTGGCGAAGGACCCTTCACTCATGAATTCACTATATTCTCTCAAAACA
GATGGCACATCCCACGCAAGAACAAAGGCGCGTTCCCTCATCAAAATTCT
TCATACATTCTTCGAAACTTGCTCCTCTGGAGTCGAGGGTTCGGCAGCTC
CTCATGAACGACCGTTTCATGTCTGGTAAATTGTTTTATAATGATTCTAT
CACTATCCATGTAACTACAGACATACAATATAGAGAACAGAATCACATGG
TACTCTCGATTGC
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