EY665472

Overview
NameEY665472
Unique NameEY665472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665472 vs. ExPASy Swiss-Prot
Match: RUBA_ARATH (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g28000 PE=1 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 6.225e-58
Identity = 131/216 (60.65%), Postives = 157/216 (72.69%), Query Frame = 1
Query:  169 ILCSPKQGSLRRRGNHNQGQRVNY-----RRFAVRASAKDIAFDQRSKAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELAYPMENAGAALIREVASKTNDSAGDGTTTASVLARKIIKL*LLSVTVWCKSCLLEERD**NCTWVGKKVGEKGQAYLRA*IYQTGASISCGNDNLIWTMIPEPMTRVSPEGAFANESSSS 801
            +LCS +Q  L   GN  QGQRV+Y     RRF+VRA+ K+IAFDQ S+AA+QAGIDKL+D VGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL   MENAGAALIREVASKTNDSAGDGTTTAS+LAR+IIK  LLSVT       L+         + +++ +K +        +  ASIS GND+LI +MI + + +V P+G  + ESSSS
Sbjct:   12 VLCSSRQSKLGG-GNQQQGQRVSYNKRTIRRFSVRANVKEIAFDQHSRAALQAGIDKLADCVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPNAMENAGAALIREVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEELQKKARPVKGRDDIRAVASISAGNDDLIGSMIADAIDKVGPDGVLSIESSSS 226          
BLAST of EY665472 vs. ExPASy Swiss-Prot
Match: RUB2_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 2.003e-56
Identity = 129/215 (60.00%), Postives = 156/215 (72.56%), Query Frame = 1
Query:  169 ILCSPKQGSLRRRGNHNQGQRVNYR----RFAVRASAKDIAFDQRSKAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELAYPMENAGAALIREVASKTNDSAGDGTTTASVLARKIIKL*LLSVTVWCKSCLLEERD**NCTWVGKKVGEKGQAYLRA*IYQTGASISCGNDNLIWTMIPEPMTRVSPEGAFANESSSS 801
            +LCS +QG L   G+  +GQRV+YR    RF++RA+ K+IAFDQ S+AA+QAGIDKL+DAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL   MENAGAALIREVASKTNDSAGDGTTTASVLAR+IIK  LLSVT       L+         + +++ ++ +        +  A+IS GND LI  MI + + +V P+G    ESSSS
Sbjct:   12 VLCSSRQGKLSG-GSQQKGQRVSYRKANRRFSLRANVKEIAFDQSSRAALQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKHGLLSVTSGANPVSLKRGIDKTVQALIEELEKRSRPVKGGRDIKAVATISAGNDELIGAMIADAIDKVGPDGVSPIESSSS 225          
BLAST of EY665472 vs. ExPASy Swiss-Prot
Match: RUBA_PEA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 3.197e-54
Identity = 122/198 (61.62%), Postives = 147/198 (74.24%), Query Frame = 1
Query:  220 QGQRVNYR----RFAVRASAKDIAFDQRSKAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELAYPMENAGAALIREVASKTNDSAGDGTTTASVLARKIIKL*LLSVTVWCKSCLLEERD**NCTWVGKKVGEKGQAYLRA*IYQTGASISCGNDNLIWTMIPEPMTRVSPEGAFANESSSS 801
            Q  RVN+R    RF V+A+AKDIAFDQ S++AMQAGIDKL+DAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL  PMENAGAALIREVASKTNDSAGDGTTTAS+LAR+IIKL LL+VT       +++        + +++ +  +        +  A+IS GND LI  MI E + +V P+G  + ESS+S
Sbjct:   30 QHGRVNFRQKPNRFVVKAAAKDIAFDQHSRSAMQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTASILAREIIKLGLLNVTSGANPVSIKKGIDKTVAALVEELEKLARPVKGGDDIKAVATISAGNDELIGKMIAEAIDKVGPDGVLSIESSNS 227          
BLAST of EY665472 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 6.666e-52
Identity = 116/186 (62.37%), Postives = 140/186 (75.27%), Query Frame = 1
Query:  244 RFAVRASAKDIAFDQRSKAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELAYPMENAGAALIREVASKTNDSAGDGTTTASVLARKIIKL*LLSVTVWCKSCLLEERD**NCTWVGKKVGEKGQAYLRA*IYQTGASISCGNDNLIWTMIPEPMTRVSPEGAFANESSSS 801
            RF+VRA+ K+I+FDQ S+AA+QAGIDKL+DAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL   MENAGAALIREVASKTNDSAGDGTTTASVLAR+IIK  LLSVT       L+         + +++ ++ +        +  A+IS GND L+ TMI + + +V P+G  + ESSSS
Sbjct:    1 RFSVRANVKEISFDQSSRAALQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKHGLLSVTSGANPVSLKRGIDKTVQALIEELEKRARPVKGGSDIKAVATISAGNDELVGTMIADAIDKVGPDGVLSIESSSS 186          
BLAST of EY665472 vs. ExPASy Swiss-Prot
Match: RUBA_WHEAT (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.145e-50
Identity = 111/181 (61.33%), Postives = 138/181 (76.24%), Query Frame = 1
Query:  259 ASAKDIAFDQRSKAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELAYPMENAGAALIREVASKTNDSAGDGTTTASVLARKIIKL*LLSVTVWCKSCLLEERD**NCTWVGKKVGEKGQAYLRA*IYQTGASISCGNDNLIWTMIPEPMTRVSPEGAFANESSSS 801
            A AK+IAFDQ+S+AA+QAG++KL++AVG+TLGPRGRNVVLDE+G+PKVVNDGVTIARAIELA PMENAGAALIREVASKTNDSAGDGTTTA VLAR+IIKL +LSVT       L++        + +++  K +    +   +  ASIS GND LI  MI + + +V P+G  + ESSSS
Sbjct:    2 ADAKEIAFDQKSRAALQAGVEKLANAVGVTLGPRGRNVVLDEYGNPKVVNDGVTIARAIELANPMENAGAALIREVASKTNDSAGDGTTTACVLAREIIKLGILSVTSGANPVSLKKGIDKTVQGLIEELERKARPVKGSGDIKAVASISAGNDELIGAMIADAIDKVGPDGVLSIESSSS 182          
BLAST of EY665472 vs. ExPASy Swiss-Prot
Match: RUBA_RICCO (RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.205e-46
Identity = 106/169 (62.72%), Postives = 126/169 (74.56%), Query Frame = 1
Query:  295 KAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELAYPMENAGAALIREVASKTNDSAGDGTTTASVLARKIIKL*LLSVTVWCKSCLLEERD**NCTWVGKKVGEKGQAYLRA*IYQTGASISCGNDNLIWTMIPEPMTRVSPEGAFANESSSS 801
            + A+Q+GIDKL+DAVGLTLGPRGRNVVLDEFGSPKVVN+GVTIARAIEL  PMENAGAALIREVASKTNDSAGDGTTTASVLAR+IIKL LLSVT       ++         + +++ +K +        +  ASIS GND LI TMI + + +V P+G  + ESSSS
Sbjct:    1 RTALQSGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNEGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSIKRGIDKTVQGLIEELEKKARPVKGRDDIKAVASISAGNDELIGTMIADAIDKVGPDGVLSIESSSS 169          
BLAST of EY665472 vs. ExPASy Swiss-Prot
Match: RUBA_CHLRE (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.304e-39
Identity = 95/189 (50.26%), Postives = 128/189 (67.72%), Query Frame = 1
Query:  241 RRFAVRAS-AKDIAFDQRSKAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELAYPMENAGAALIREVASKTNDSAGDGTTTASVLARKIIKL*LLSVTVWCKSCLLEERD**NCTWVGKKVGEKGQAYLRA*IYQTGASISCGNDNLIWTMIPEPMTRVSPEGAFANESSSS 801
            RR  +RA+ AK+I FDQ S+  +QAGI+K++DAVG+TLGPRGRNVVL++ FG P+V+NDGV+I RAIEL  P+ENAGA LI+EVA +TND+AGDGTTTASVLAR++I   L SVT       ++        ++  K+ E  +        +  ASIS GNDN I  MI + + +V   G  + E+S+S
Sbjct:   27 RRLVIRAADAKEIVFDQESRRRLQAGINKVADAVGVTLGPRGRNVVLEQKFGVPQVINDGVSIRRAIELKDPVENAGAQLIKEVAGRTNDAAGDGTTTASVLAREMIHYGLQSVTAGANPIAVKRGLDKTAEYLVAKLKEHAKPVKGRDDIKNVASISAGNDNAIGEMIADALDKVGSNGVLSIETSNS 215          
BLAST of EY665472 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.800e-34
Identity = 82/181 (45.30%), Postives = 118/181 (65.19%), Query Frame = 1
Query:  265 AKDIAFDQRSKAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELAYPMENAGAALIREVASKTNDSAGDGTTTASVLARKIIKL*LLSVTVWCKSCLLEERD**NCTWVGKKVGEKGQAYLRA*IYQTGASISCGNDNLIWTMIPEPMTRVSPEGAFANESSSSI 804
            AK + FD+ S+ A++ G++ L+DAV +TLGP+GRNVVL++ FG+P+++NDGVTIA+ +EL  P+ENAGA L+REVASKTND AGDGTTTA+VLA+ +I+  L +V        L +        + K++  K +      I Q  A+IS GND  +  MI + M +V  +G    E S S+
Sbjct:    2 AKHVVFDEESRRALERGVNSLADAVRITLGPKGRNVVLEKKFGAPQIINDGVTIAKEVELEDPLENAGAQLMREVASKTNDVAGDGTTTATVLAQALIREGLKNVAAGANPVALRKGIDKTIDALVKEIEAKSKPVAGDAIAQV-ATISAGNDTEVGQMIAQAMDKVGKDGVITVEESKSL 181          
BLAST of EY665472 vs. ExPASy Swiss-Prot
Match: CH602_GLOVI (60 kDa chaperonin 2 OS=Gloeobacter violaceus GN=groL2 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.182e-32
Identity = 83/181 (45.86%), Postives = 114/181 (62.98%), Query Frame = 1
Query:  265 AKDIAFDQRSKAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELAYPMENAGAALIREVASKTNDSAGDGTTTASVLARKIIKL*LLSVTVWCKSCLLEERD**NCTWVGKKVGEKGQAYLRA*IYQTGASISCGNDNLIWTMIPEPMTRVSPEGAFANESSSSI 804
            AK I FD+ ++ A++ G++ L+DAV +TLGP+GRNVVL++ FG+P++VNDGVTIA+ IEL  P+EN GA LIREVASKTND AGDGTTTA+VLA+ +I+  L +V        L+         + +++    +           A+IS GND  I  MI E M +V  EG    E S S+
Sbjct:    2 AKMIVFDETARRALERGVNALADAVRVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDPLENTGAQLIREVASKTNDVAGDGTTTATVLAQALIREGLRNVAAGANPMSLKRGMEKTVAKLVQEIAAMAKPVEDNKTIAEVATISSGNDEEIGQMIAEAMDKVGKEGVITVEESKSL 182          
BLAST of EY665472 vs. ExPASy Swiss-Prot
Match: CH601_ANAVT (60 kDa chaperonin 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.440e-32
Identity = 80/181 (44.20%), Postives = 116/181 (64.09%), Query Frame = 1
Query:  265 AKDIAFDQRSKAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELAYPMENAGAALIREVASKTNDSAGDGTTTASVLARKIIKL*LLSVTVWCKSCLLEERD**NCTWVGKKVGEKGQAYLRA*IYQTGASISCGNDNLIWTMIPEPMTRVSPEGAFANESSSSI 804
            AK I +++ ++ A++ GID L++AV +TLGP+GRNVVL++ FG+P++VNDGVTIA+ IEL   +EN G ALIR+ ASKTND+AGDGTTTA+VLA  I+K  L +V     + LL+        ++  ++ E  +    +       SIS GND+ +  MI E M +V  EG  + E   S+
Sbjct:    2 AKRIIYNENARRALERGIDILAEAVAVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAIVKEGLRNVAAGANAILLKRGIDKATGFLVDRIKEHARPVEDSKSIAQVGSISAGNDDEVGQMIAEAMDKVGKEGVISLEEGKSV 182          
The following BLAST results are available for this feature:
BLAST of EY665472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBA_ARATH6.225e-5860.65RuBisCO large subunit-binding protein subunit alph... [more]
RUB2_BRANA2.003e-5660.00RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_PEA3.197e-5461.62RuBisCO large subunit-binding protein subunit alph... [more]
RUB1_BRANA6.666e-5262.37RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_WHEAT2.145e-5061.33RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_RICCO3.205e-4662.72RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_CHLRE1.304e-3950.26RuBisCO large subunit-binding protein subunit alph... [more]
CH601_ACAM14.800e-3445.3060 kDa chaperonin 1 OS=Acaryochloris marina (strai... [more]
CH602_GLOVI1.182e-3245.8660 kDa chaperonin 2 OS=Gloeobacter violaceus GN=gr... [more]
CH601_ANAVT3.440e-3244.2060 kDa chaperonin 1 OS=Anabaena variabilis (strain... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-E05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665472 ID=EY665472; Name=EY665472; organism=Citrus sinensis; type=EST; length=897bp
GGGAACTGCGGTCGGGTCCGGATTCCGGGTCGACCACGCGTCCGCCCACG
CGTCCGGCAGCTCCCATTTGTTGGTACCTTATCCGAAACAATTTCCCTCA
GCAGACCCTTTACTCCGTTTGGTTGATTGTTCGAAATGGCTTCTGCTAAC
GCCCTTTCTTCGGCTTCCATTCTTTGCTCTCCCAAACAGGGGAGCTTGAG
GAGGAGAGGAAATCACAATCAGGGTCAGAGAGTAAATTACAGGAGATTCG
CTGTTAGAGCGTCTGCCAAAGATATTGCTTTTGACCAAAGGTCCAAGGCC
GCAATGCAAGCCGGCATCGATAAGCTTTCCGATGCTGTTGGCCTTACTCT
TGGTCCAAGAGGGAGAAATGTTGTTCTGGATGAATTTGGGAGTCCGAAAG
TGGTTAATGATGGAGTAACAATAGCCCGAGCTATTGAGCTCGCATATCCC
ATGGAAAATGCTGGTGCTGCTCTTATTAGGGAGGTTGCAAGCAAAACCAA
TGACTCTGCTGGTGATGGAACAACAACTGCATCAGTTCTTGCACGAAAAA
TAATTAAACTATGACTCCTGAGTGTCACCGTCTGGTGCAAATCCTGTCTC
CTTGAAGAGAGGGATTGATAAAACTGTACATGGGTTGGGAAAAAAGTTGG
AGAAAAAGGCCAGGCCTATCTAAGGGCGTGAATATATCAAACTGGTGCTT
CCATCTCCTGTGGGAATGATAACCTGATTTGGACAATGATCCCCGAGCCA
ATGACCAGGGTGAGCCCGGAGGGCGCCTTTGCAAACGAGTCCTCATCTTC
AATTTGAAACTACTGTTGGAAAATCGAGGACGGATAGGTAAATGAAAAGG
CGCTTCCATTCTTCTTCCCCCCTTTTCCAAAACCCCCCCACAAATAA
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