FC871882

Overview
NameFC871882
Unique NameFC871882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4017 contig Csv1_Contig4017:72..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871882 vs. ExPASy Swiss-Prot
Match: DR102_ARATH (DNA-damage-repair/toleration protein DRT102 OS=Arabidopsis thaliana GN=DRT102 PE=2 SV=2)

HSP 1 Score: 347.051 bits (889), Expect = 6.846e-95
Identity = 173/255 (67.84%), Postives = 201/255 (78.82%), Query Frame = 2
Query:   47 PLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRGVXXXXXXXXXXRGLVACGTGVGVAIFANKNPGVFAATCLTPADALNARSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENLSCFLDKSMIEMPLIGKNDKLDN-----DSSTSTCSICCLVKNRELNPVEMIPGGSMKIVRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGD 796
            PLKII GAD FGA LKDA+V+HLRSL IDVED G S YYS G+EVGR V          RGLV CGTGVGVA+FANK PGV+AATCL+  DA+NARSI+NCNVLA SG+ TS E+A+EI D W+KTPFK+PCPASG +PW   +S FLD S+ EM  IGK+   D+     D +T++C ICCL KNRE  PV+++PGGSMKIVRE+PTSAIVRFKAGSVEPAHHHTFGHDLVV++GKKSVWNL+K ER DL  GD
Sbjct:   11 PLKIITGADDFGASLKDAMVTHLRSLGIDVEDTGVSSYYSAGSEVGRRVSASSSSEV--RGLVCCGTGVGVAMFANKFPGVYAATCLSVEDAVNARSISNCNVLAFSGIKTSPETALEIFDAWIKTPFKSPCPASGSEPWSSVISSFLDNSLSEMSQIGKSTAGDSTTKKIDETTASCVICCLAKNREFTPVDIMPGGSMKIVRETPTSAIVRFKAGSVEPAHHHTFGHDLVVIKGKKSVWNLSKKERADLVDGD 263          
BLAST of FC871882 vs. ExPASy Swiss-Prot
Match: RPIB_ECOLI (Ribose-5-phosphate isomerase B OS=Escherichia coli (strain K12) GN=rpiB PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.237e-11
Identity = 46/132 (34.85%), Postives = 63/132 (47.73%), Query Frame = 2
Query:   53 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGT-----SDYYSIGAEVGRGVXXXXXXXXXXRGLVACGTGVGVAIFANKNPGVFAATCLTPADALNARSINNCNVLAVSGMSTSKESAVEILDTWLKTPFK 433
            KI  G D  G  LK  +V+HL    ++V D GT     +DY    ++V   V           G++ CGTGVG++I ANK  G+ A  C  P  A  +R  N+ NVLA        E A  I+D WL   ++
Sbjct:    3 KIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDG----GILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQHNDTNVLAFGSRVVGLELAKMIVDAWLGAQYE 130          
The following BLAST results are available for this feature:
BLAST of FC871882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DR102_ARATH6.846e-9567.84DNA-damage-repair/toleration protein DRT102 OS=Ara... [more]
RPIB_ECOLI1.237e-1134.85Ribose-5-phosphate isomerase B OS=Escherichia coli... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK3CC10FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3CC10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871882 ID=FC871882; Name=FC871882; organism=Citrus sinensis; type=EST; length=797bp
CTCGTAGTGAACCATGGCTGAAAACGCCGCCGCTGCCGCTCCCAGCCCTC
TCAAGATCATCGCAGGCGCCGACTCCTTCGGCGCCGAATTGAAAGACGCT
CTGGTCTCCCACCTCCGGTCACTCAACATAGACGTGGAAGATCTCGGCAC
CTCCGATTACTACTCCATCGGCGCCGAGGTCGGCCGCGGCGTCTCCTCCT
CCGATTCCTCCGACACCACCACACGTGGCCTCGTCGCCTGCGGAACCGGA
GTCGGCGTCGCAATCTTCGCCAACAAAAACCCCGGCGTCTTCGCCGCCAC
GTGTCTCACTCCCGCCGACGCCCTGAACGCCCGCTCCATCAACAACTGCA
ACGTCCTCGCCGTCTCAGGTATGTCCACTTCCAAAGAATCCGCCGTCGAA
ATCCTCGACACGTGGCTTAAAACCCCTTTTAAGGCCCCATGCCCCGCGTC
GGGTTTTAAGCCATGGGAAGAGAACTTGTCGTGTTTTCTCGACAAGTCAA
TGATCGAAATGCCCCTGATTGGTAAAAATGATAAATTAGATAATGATTCT
AGTACCAGTACTTGTAGCATATGTTGCTTAGTTAAGAACAGGGAATTGAA
TCCTGTGGAAATGATTCCGGGTGGATCAATGAAGATTGTTAGGGAGAGTC
CAACGTCGGCCATTGTGAGGTTTAAGGCCGGGAGTGTGGAGCCTGCGCAT
CACCATACATTTGGGCATGATCTGGTGGTGCTGGAAGGGAAGAAGAGTGT
GTGGAATTTGACTAAAGGGGAAAGGTTCGATTTGACTGTTGGCGATT
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