EH406564

Overview
NameEH406564
Unique NameEH406564
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length364
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5634 contig Csv1_Contig5634:497..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH406564 vs. ExPASy Swiss-Prot
Match: AGUA_ARATH (Agmatine deiminase OS=Arabidopsis thaliana GN=AIH PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.405e-17
Identity = 44/61 (72.13%), Postives = 48/61 (78.69%), Query Frame = 1
Query:    1 GIIAP*FGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPAIPTNAAK 183
            GIIAP FGD   D EA+RVLS  FP + VVGIE AREIVL GGNIHCITQQQPA PT+ A+
Sbjct:  320 GIIAPQFGDPIRDKEAIRVLSDTFPHHSVVGIENAREIVLAGGNIHCITQQQPAEPTSVAE 380          
BLAST of EH406564 vs. ExPASy Swiss-Prot
Match: AGUA_PSEU5 (Agmatine deiminase OS=Pseudomonas stutzeri (strain A1501) GN=aguA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.752e-12
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 1
Query:    1 GIIAP*FGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPA 162
            GIIAP FGD   DGEA R+L + FP+++VV +   REI+LGGGNIHCITQQQPA
Sbjct:  313 GIIAPAFGDPL-DGEAERILREVFPEHDVVMVP-GREILLGGGNIHCITQQQPA 364          
BLAST of EH406564 vs. ExPASy Swiss-Prot
Match: AGUA_PSEAE (Agmatine deiminase OS=Pseudomonas aeruginosa GN=aguA PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.750e-11
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 GIIAP*FGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPA 162
            GIIAP F D K D EA  +L + FP++EVV +   REI+LGGGNIHCITQQQPA
Sbjct:  313 GIIAPSFDDPK-DAEARAILQRVFPEHEVVMVP-GREILLGGGNIHCITQQQPA 364          
BLAST of EH406564 vs. ExPASy Swiss-Prot
Match: AGUA_PSEA8 (Agmatine deiminase OS=Pseudomonas aeruginosa (strain LESB58) GN=aguA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.750e-11
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 GIIAP*FGDKKWDGEAVRVLSQAFPKYEVVGIERAREIVLGGGNIHCITQQQPA 162
            GIIAP F D K D EA  +L + FP++EVV +   REI+LGGGNIHCITQQQPA
Sbjct:  313 GIIAPSFDDPK-DAEARAILQRVFPEHEVVMVP-GREILLGGGNIHCITQQQPA 364          
The following BLAST results are available for this feature:
BLAST of EH406564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AGUA_ARATH1.405e-1772.13Agmatine deiminase OS=Arabidopsis thaliana GN=AIH ... [more]
AGUA_PSEU56.752e-1266.67Agmatine deiminase OS=Pseudomonas stutzeri (strain... [more]
AGUA_PSEAE9.750e-1164.81Agmatine deiminase OS=Pseudomonas aeruginosa GN=ag... [more]
AGUA_PSEA89.750e-1164.81Agmatine deiminase OS=Pseudomonas aeruginosa (stra... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK3DC12FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406564 ID=EH406564; Name=EH406564; organism=Citrus sinensis; type=EST; length=364bp
GGAATCATCGCACCTTAGTTTGGGGACAAAAAGTGGGACGGTGAAGCTGT
TCGTGTCCTGTCTCAAGCCTTTCCTAAGTATGAAGTGGTAGGAATTGAAA
GAGCAAGGGAAATTGTTTTGGGAGGTGGAAATATACATTGCATTACTCAA
CAACAACCAGCCATTCCAACAAATGCTGCGAAGCTAGACTGATTAGATAC
TGAAATTATAACTGTGAACTCAGAGGCAGCAGCGTTGATCTCCAGATTGA
GCATGTGTGTTTTTAAGAGGACATAATTTAAGCATTTGACAGTTAGTAGC
TCTGTGGGAATCCTGATGATTGATTGGCAAACACTGTCTTAAATAACATA
TGATAAAGCTTAAG
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