EY720716

Overview
NameEY720716
Unique NameEY720716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720716 vs. ExPASy Swiss-Prot
Match: RH53_ARATH (DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 66/142 (46.48%), Postives = 74/142 (52.11%), Query Frame = 1
Query:    1 VPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVE-GGGDMYNDMGGRSG---YGSMRDRQYADTGFDRSSPMGDPGFGPFWRVQTSWGRPVMVGITGSYAGQGGGVSLG 414
            VPNVDLIIHYELPN +ETFVH            SAILIY+  Q+R VK IER+VG RFT+LP IAVE G   M+  +G RSG    G MRDR     G       G  G+G                  GS  G GGG S G
Sbjct:  414 VPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVGSRFTELPSIAVERGSASMFEGIGSRSGGSFGGGMRDR-----GSSFGGRSGGGGYG------------------GSSGGYGGGRSGG 532          
BLAST of EY720716 vs. ExPASy Swiss-Prot
Match: RH53_ORYSJ (DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica GN=Os07g0143700 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.982e-20
Identity = 61/150 (40.67%), Postives = 76/150 (50.67%), Query Frame = 1
Query:    1 VPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIERDVGCRFTQLPRIAV-EGGGDMYN--------------------DMGGRSGYGSMRDRQYAD-TGFDRSSPMG----------DPGFGPFWRVQTSWGR 354
            +PNVDL+IHYELPNTSE FVH            SAILIYT+ QAR V+ IE+D+GC+FT+LP+I V +   DM+N                      GG  G+G  R R + D  GF  S   G            GFG F R   ++GR
Sbjct:  393 IPNVDLVIHYELPNTSELFVHRSGRTARAGKKGSAILIYTNDQARAVRIIEQDIGCKFTELPKIEVADEASDMFNVVRDNRSRLAGSPRTGGSSFGRGGYGGFGEGRSRGFGDFDGFGSSPNRGGRSRDAGSRYGSGFGDFRRPSNAFGR 542          
BLAST of EY720716 vs. ExPASy Swiss-Prot
Match: RH9_ARATH (DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.273e-19
Identity = 63/138 (45.65%), Postives = 74/138 (53.62%), Query Frame = 1
Query:    1 VPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVE-GGGDMYNDMGGRSGYGSMRDRQYADTGF-DRSSPMGDPGFGPFWRVQTSWGRPVMVGITGSYAGQGGGVS 408
            VPNVDL+IHYELPN +ETFVH            SAILI+   Q R VK IE++VG RF +LP IAVE G   M+  +G RSG GS    +    G+    S  G  G G +     S GR    G  GSY G GG  S
Sbjct:  426 VPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEKEVGSRFNELPSIAVERGSASMFEGVGARSG-GSFGGGRSGGGGYGSYGSSSGRSGGGSYGGYGGSSGR--SGGGGGSYGGSGGSSS 560          
BLAST of EY720716 vs. ExPASy Swiss-Prot
Match: RH9_ORYSJ (DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp. japonica GN=Os12g0611200 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 58/146 (39.73%), Postives = 76/146 (52.05%), Query Frame = 1
Query:    1 VPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVE------GGGDMYNDMG-GRSGYGSMRDRQYADTGFDRSSPMGDPGFGPFWRVQTSWGRPVMVGITGSYAGQGGGVSLGR 417
            +PNVDL+IH+ELPN+SE FVH             AI++++ QQ+R ++ +E DVGC+FT+LP+I VE      GG D +   G GR G GS   R    +   R    GD GFG   R    +GR    G   S  G  G    GR
Sbjct:  407 IPNVDLVIHFELPNSSELFVHRSGRTGRAGKKGKAIVMHSYQQSRAIRMVENDVGCKFTELPKINVEGSDLMSGGFDSFGGGGFGREGGGSYGRRGSFGSSSSRGGGFGDSGFG---RSGGGFGRSGGGGFGRSSGGGFGDSGFGR 549          
BLAST of EY720716 vs. ExPASy Swiss-Prot
Match: RH3_ORYSJ (DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    1 VPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIERDVGCRFTQLPRIAVE 201
            +PNVDLIIHYELPN  ETFVH            +AIL++T+ Q R V+S+ERDVGCRF  +   A+E
Sbjct:  416 IPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIE 482          
BLAST of EY720716 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = 1
Query:    1 VPNVDLIIHYELPNTSETFVHXXXXXXXXXXXXSAILIYTDQQARQVKSIERDVGCRF 174
            +PNVDL+IHYELPN  ETFVH            SAIL++T  Q R V+S+ERDVGC F
Sbjct:  416 IPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHF 473          
The following BLAST results are available for this feature:
BLAST of EY720716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RH53_ARATH2.056e-2046.48DEAD-box ATP-dependent RNA helicase 53 OS=Arabidop... [more]
RH53_ORYSJ5.982e-2040.67DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sa... [more]
RH9_ARATH2.273e-1945.65DEAD-box ATP-dependent RNA helicase 9 OS=Arabidops... [more]
RH9_ORYSJ1.473e-1839.73DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sat... [more]
RH3_ORYSJ5.423e-1353.73DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sat... [more]
RH3_ARATH5.996e-1256.90DEAD-box ATP-dependent RNA helicase 3 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-013-D06-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720716 ID=EY720716; Name=EY720716; organism=Citrus sinensis; type=EST; length=709bp
GTACCTAATGTTGATCTGATAATTCATTATGAGCTTCCAAACACATCGGA
GACTTTTGTTCACCGAACAGGTCGAACTGGTCGTGCTGGAAAGAAAGGAA
GTGCAATTCTTATCTACACAGATCAGCAGGCCAGGCAAGTCAAGAGTATT
GAGCGAGATGTTGGATGCAGATTTACTCAGCTCCCAAGGATCGCCGTTGA
AGGAGGTGGAGACATGTACAATGACATGGGTGGCCGGTCTGGGTATGGAA
GTATGAGAGATCGTCAATATGCTGATACAGGATTTGATCGTTCCAGTCCT
ATGGGGGATCCTGGATTTGGGCCGTTCTGGAGGGTCCAGACCTCCTGGGG
TCGGCCCGTTATGGTGGGTATAACAGGTTCCTATGCGGGTCAAGGTGGGG
GGGTCAGCCTCGGGCGGGTGTGGGTTCTACTGCCGACCGATCCGGGGGAG
GTTGGGGGGCCGGACGTCTAGTCCACCGGGGGGGTGGGGGGAAGCCCGGT
GAAATATAATCATTCAGATGCGCGGGGTGGCGGTGGGTTTCCGATTCCGG
GGCTGAATGAGGGTTCTTGGTGGGCGGTCGGGGTAGGGGGAGTCGTAATC
GGCTTATTGCCGTTCTATCGCTGTGCGGGGCGAGCTGGCGTTGTGGGGGG
TCGTCATAGGAGGCAGGGGAAGGGATAGCGGCTGGGCGCGGGTGGTGGCG
GGGGGGGGG
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