EY720269

Overview
NameEY720269
Unique NameEY720269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length292
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11000 contig Csv1_Contig11000:74..366. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
[Close]
BLAST of EY720269 vs. ExPASy Swiss-Prot
Match: YHDY_ECOLI (Inner membrane amino-acid ABC transporter permease protein yhdY OS=Escherichia coli (strain K12) GN=yhdY PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.824e-19
Identity = 41/72 (56.94%), Postives = 58/72 (80.56%), Query Frame = 3 
Query:   72 YGLSFLVVYPIVAYFLLHGGIFGMTNVATSQWGGLMLTLVIATVGIAGALPLGIVLALGRRSNMPAIRVVCV 287
            Y  ++ V+YP++ ++L++GG F +  V T QWGGL LTL+IA+VGIAGALP GI+LALGRRS+MP +R++ V
Sbjct:  125 YIAAWAVIYPLIVWWLMYGGFFALERVETRQWGGLTLTLIIASVGIAGALPWGILLALGRRSHMPIVRILSV 196
[Close]
BLAST of EY720269 vs. ExPASy Swiss-Prot
Match: AAPM_RHIL3 (General L-amino acid transport system permease protein aapM OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=aapM PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.213e-18
Identity = 45/84 (53.57%), Postives = 62/84 (73.81%), Query Frame = 3 
Query:   39 VVISRFTRKAVYGLSFLVVYPIVAYFLLHGGIFGMTNVATSQWGGLMLTLVIATVGIAGALPLGIVLALGRRSNMPAIRVVCVT 290
            ++I    RK +  +    V P++A++LLHGG FG+  V T  WGGLM+TLV++ VGIA +LP+GI+LALGRRS MP IR++CVT
Sbjct:  131 MLIPSAPRKGLNAILLFAVLPVIAFWLLHGG-FGLEVVETPLWGGLMVTLVLSFVGIAVSLPVGILLALGRRSRMPVIRMLCVT 213
The following BLAST results are available for this feature:
BLAST of EY720269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YHDY_ECOLI5.824e-1956.94Inner membrane amino-acid ABC transporter permease... [more]
AAPM_RHIL32.213e-1853.57General L-amino acid transport system permease pro... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-004-C04-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720269 ID=EY720269; Name=EY720269; organism=Citrus sinensis; type=EST; length=292bp
CACCTGACCGTGTGGCTGGCCATCGTGGGTGTGGCGCCGTTGTCATCTCG
CGCTTCACGCGCAAGGCGGTCTACGGCCTGAGCTTTTTGGTGGTGTACCC
GATCGTTGCCTACTTCCTGCTGCACGGCGGGATCTTCGGCATGACCAACG
TGGCCACCAGCCAATGGGGCGGCTTGATGCTGACCCTGGTGATCGCCACC
GTCGGCATTGCCGGGGCCTTGCCCCTGGGCATCGTGCTGGCGCTGGGTCG
GCGTTCGAACATGCCGGCGATTCGTGTGGTCTGCGTGACCTT
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