EY665432
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY665432 vs. ExPASy Swiss-Prot
Match: SMD2_DROME (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=snRNP2 PE=1 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 4.644e-40 Identity = 79/88 (89.77%), Postives = 84/88 (95.45%), Query Frame = 3 Query: 168 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKVFLRGDSVIIVLR 431 FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKK PVNKDRFISK+FLRGDSVI+VLR Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLR 110
BLAST of EY665432 vs. ExPASy Swiss-Prot
Match: SMD2_MOUSE (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2 PE=2 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 1.765e-39 Identity = 77/88 (87.50%), Postives = 85/88 (96.59%), Query Frame = 3 Query: 168 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKVFLRGDSVIIVLR 431 FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISK+FLRGDSVI+VLR Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLR 111
BLAST of EY665432 vs. ExPASy Swiss-Prot
Match: SMD2_HUMAN (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 1.765e-39 Identity = 77/88 (87.50%), Postives = 85/88 (96.59%), Query Frame = 3 Query: 168 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKVFLRGDSVIIVLR 431 FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISK+FLRGDSVI+VLR Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLR 111
BLAST of EY665432 vs. ExPASy Swiss-Prot
Match: SMD2_BOVIN (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 1.765e-39 Identity = 77/88 (87.50%), Postives = 85/88 (96.59%), Query Frame = 3 Query: 168 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKVFLRGDSVIIVLR 431 FNTGPLSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISK+FLRGDSVI+VLR Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLR 111
BLAST of EY665432 vs. ExPASy Swiss-Prot
Match: SMD2_CAEEL (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 3.115e-36 Identity = 73/88 (82.95%), Postives = 81/88 (92.05%), Query Frame = 3 Query: 168 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKVFLRGDSVIIVLR 431 FN GPLS+L SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKKA V KDRFISK+FLRGDSVI+V++ Sbjct: 24 FNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVK 111
BLAST of EY665432 vs. ExPASy Swiss-Prot
Match: SMD2_DICDI (Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum GN=snrpd2 PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 6.939e-36 Identity = 72/87 (82.76%), Postives = 81/87 (93.10%), Query Frame = 3 Query: 171 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKVFLRGDSVIIVLR 431 + GPLS+LM SV NNTQVLIN RNNKKLLGRVRAFDRHCNMVLENV+E+WTE+PKT KGKKKA P+NKDRFISK+FLRGDSVI+VL+ Sbjct: 16 SNGPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLK 102
BLAST of EY665432 vs. ExPASy Swiss-Prot
Match: SMD2_SCHPO (Probable small nuclear ribonucleoprotein Sm D2 OS=Schizosaccharomyces pombe GN=smd2 PE=2 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 1.073e-28 Identity = 62/88 (70.45%), Postives = 73/88 (82.95%), Query Frame = 3 Query: 168 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKVFLRGDSVIIVLR 431 F+ GPLSVL +VKN+ QVLINCRNNKKLL RV+AFDRH NMVLENV+EMWTE +T G KK +NKDRFISK+FLRGD V++V+R Sbjct: 25 FSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASG-KKGKAINKDRFISKMFLRGDGVVLVVR 111
BLAST of EY665432 vs. ExPASy Swiss-Prot
Match: SMD2_YEAST (Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae GN=SMD2 PE=1 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 4.087e-20 Identity = 48/88 (54.55%), Postives = 66/88 (75.00%), Query Frame = 3 Query: 168 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKVFLRGDSVIIVLR 431 F GP+S++ ++ T V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE KK +N++RFISK+FLRGDSVI+VL+ Sbjct: 26 FKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE-------KKGKNVINRERFISKLFLRGDSVIVVLK 106 The following BLAST results are available for this feature:
BLAST of EY665432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY665432 ID=EY665432; Name=EY665432; organism=Citrus sinensis; type=EST; length=1350bpback to top |