EY665432

Overview
NameEY665432
Unique NameEY665432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1350
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665432 vs. ExPASy Swiss-Prot
Match: SMD2_DROME (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=snRNP2 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 4.644e-40
Identity = 79/88 (89.77%), Postives = 84/88 (95.45%), Query Frame = 3
Query:  168 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKVFLRGDSVIIVLR 431
            FNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKK  PVNKDRFISK+FLRGDSVI+VLR
Sbjct:   23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLR 110          
BLAST of EY665432 vs. ExPASy Swiss-Prot
Match: SMD2_MOUSE (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.765e-39
Identity = 77/88 (87.50%), Postives = 85/88 (96.59%), Query Frame = 3
Query:  168 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKVFLRGDSVIIVLR 431
            FNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISK+FLRGDSVI+VLR
Sbjct:   24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLR 111          
BLAST of EY665432 vs. ExPASy Swiss-Prot
Match: SMD2_HUMAN (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.765e-39
Identity = 77/88 (87.50%), Postives = 85/88 (96.59%), Query Frame = 3
Query:  168 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKVFLRGDSVIIVLR 431
            FNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISK+FLRGDSVI+VLR
Sbjct:   24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLR 111          
BLAST of EY665432 vs. ExPASy Swiss-Prot
Match: SMD2_BOVIN (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.765e-39
Identity = 77/88 (87.50%), Postives = 85/88 (96.59%), Query Frame = 3
Query:  168 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKVFLRGDSVIIVLR 431
            FNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISK+FLRGDSVI+VLR
Sbjct:   24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLR 111          
BLAST of EY665432 vs. ExPASy Swiss-Prot
Match: SMD2_CAEEL (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.115e-36
Identity = 73/88 (82.95%), Postives = 81/88 (92.05%), Query Frame = 3
Query:  168 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKVFLRGDSVIIVLR 431
            FN GPLS+L  SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKKA  V KDRFISK+FLRGDSVI+V++
Sbjct:   24 FNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVK 111          
BLAST of EY665432 vs. ExPASy Swiss-Prot
Match: SMD2_DICDI (Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum GN=snrpd2 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 6.939e-36
Identity = 72/87 (82.76%), Postives = 81/87 (93.10%), Query Frame = 3
Query:  171 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKVFLRGDSVIIVLR 431
            + GPLS+LM SV NNTQVLIN RNNKKLLGRVRAFDRHCNMVLENV+E+WTE+PKT KGKKKA P+NKDRFISK+FLRGDSVI+VL+
Sbjct:   16 SNGPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLK 102          
BLAST of EY665432 vs. ExPASy Swiss-Prot
Match: SMD2_SCHPO (Probable small nuclear ribonucleoprotein Sm D2 OS=Schizosaccharomyces pombe GN=smd2 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.073e-28
Identity = 62/88 (70.45%), Postives = 73/88 (82.95%), Query Frame = 3
Query:  168 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKVFLRGDSVIIVLR 431
            F+ GPLSVL  +VKN+ QVLINCRNNKKLL RV+AFDRH NMVLENV+EMWTE  +T  G KK   +NKDRFISK+FLRGD V++V+R
Sbjct:   25 FSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASG-KKGKAINKDRFISKMFLRGDGVVLVVR 111          
BLAST of EY665432 vs. ExPASy Swiss-Prot
Match: SMD2_YEAST (Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae GN=SMD2 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 4.087e-20
Identity = 48/88 (54.55%), Postives = 66/88 (75.00%), Query Frame = 3
Query:  168 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKVFLRGDSVIIVLR 431
            F  GP+S++  ++   T V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE       KK    +N++RFISK+FLRGDSVI+VL+
Sbjct:   26 FKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE-------KKGKNVINRERFISKLFLRGDSVIVVLK 106          
The following BLAST results are available for this feature:
BLAST of EY665432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SMD2_DROME4.644e-4089.77Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_MOUSE1.765e-3987.50Small nuclear ribonucleoprotein Sm D2 OS=Mus muscu... [more]
SMD2_HUMAN1.765e-3987.50Small nuclear ribonucleoprotein Sm D2 OS=Homo sapi... [more]
SMD2_BOVIN1.765e-3987.50Small nuclear ribonucleoprotein Sm D2 OS=Bos tauru... [more]
SMD2_CAEEL3.115e-3682.95Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_DICDI6.939e-3682.76Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_SCHPO1.073e-2870.45Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_YEAST4.087e-2054.55Small nuclear ribonucleoprotein Sm D2 OS=Saccharom... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-H06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665432 ID=EY665432; Name=EY665432; organism=Citrus sinensis; type=EST; length=1350bp
TATATATTTTTTTTTTTTGGACTGGTCGGTCGGAATTCCGGGTCGACCAC
GCGTCCGCTCGTCGTCCGCCGCAGTTAGGTTGTCGTTCAGTCCTCGCTTG
TAGAAGCAATTGTCAAACATGAGCAGTCGGCCGATGGAGGACCAAATGTC
AAAAATGAGGAAGAGGATTCAACACAGGTCCACTTTCTGTTTTGATGATG
AGTGTTAAAAACAATACCCAGGTGCTTATTAACTGTCGGAACAACAAGAA
GCTTCTTGGTCGTGTGAGAGCTTTTGATCGTCACTGCAATATGGTTCTTG
AGAATGTCAGGGAGATGTGGACTGAGTTGCCTAAGACTGGGAAAGGCAAG
AAAAAGGCTCTTCCAGTTAACAAGGATAGATTCATCAGTAAAGTGTTTCT
CCGAGGAGATTCTGTGATCATTGTTCTTAGGAAATCCAAGTGAAGTACAC
ACCTAGCTTGACAGCCTCAGCAATTTTAACGAAAGATCTATATGGACAAT
ACTGTTTGTGATAGGTAANNAATGAGCCAGCAAGCCTAGATTTGTTTGAA
GGATGTTCGCATGGAATTTGTGCAATTGTGCTGCAAAGTTTGGAATATGG
TTGGAGTACCTAAGTGGCCTGACATAAGGGTGACTTTTTGGTGGGTTGGA
ATTCAATGGACTAGAATGTTAGGGTGGGAGCCCATTACAATTTCCACTCT
CAAGGCCCGTTACTTTTATTTAAACCTTGATCGGAATATGAGGCCTAACC
TTGGGATTCCAACCCAACCCTGGATAACAAAATTCTATTTGTAGAAAAAT
AAAAAAAAGGGGGCGCCCCAAAGACCAATTTATAACCGGTGTGCAGCGCA
AGCCTCTTAGGGTCCCAAATTATTCAGGGCCTGTATAACACCGGGAGGAA
AACCGGGTTCACACTATCCCTTTCAACCCCTCTTCCCCGGGGTTATAGAA
GGCCCCACACCCCCCCAATACCCCTGAGGAAGGACCCTGCGGGGAAATCG
GGGAGGGGTAAAAACGGACATCATCACAGAAAGCTTTTTCACTTTTACAC
TGTACTCCAATTAAGGCGATTAAGAAAAATNTACGAAATAGTCGAATTAT
CGACGCGACATAAGGACTATTAGCATGTGAATGCNATCATGGTGGATCAA
GCATAACATAATTCTTAATGTCGTCTGATTACTTTTCCTAATTGACCACG
TCTGAGGGCTGGAATATCTCTTGTAGTCATGAACTAGGCTCTTCTACATA
TTCGTATTCTCCTGCTTGCACTCATTCNTCGTCGAACATATCGATANGAT
ATCTAGCATAAGTCCACAACGCACAACGCACAACTTCTGATTGATCAGAC
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