EY665390

Overview
NameEY665390
Unique NameEY665390
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665390_ssr214 microsatellite EY665390_ssr214:214..228. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665390 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.704e-37
Identity = 89/151 (58.94%), Postives = 108/151 (71.52%), Query Frame = 3
Query:  123 RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWVLGTSVLLTVASLVPLFKGGSVESKSKGFMNSEAE 551
            RS  NQ +++   Y+P+LRRNV+L VR  A             PT P A    PQP   + P+MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAW LGTSVLL++ASL+P F+G SVESKSK  M+S+AE
Sbjct:   20 RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAE 170          
BLAST of EY665390 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.103e-22
Identity = 70/173 (40.46%), Postives = 100/173 (57.80%), Query Frame = 3
Query:   54 MAASLATQSMLASPVAARVTGIRRSGANQLSSVKY---LPSLRRNVNLSVRCTAXXXXXXXXXXXXP--TIPKAEPQPPKKPRMSTGFS-EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWVLGTSVLLTVASLVPLFKGGSVESKSKGFMNSEAEI 554
            MA+S    ++ A     + T I R G N L   K    LP +RRN   +VR                  T        P +  ++T  + ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV W L TS +L +A+L+P+++G S E+K+ GF NS+AEI
Sbjct:    1 MASSTCYATIPAMSCRGQST-ITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEI 172          
BLAST of EY665390 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.548e-21
Identity = 51/96 (53.12%), Postives = 65/96 (67.71%), Query Frame = 3
Query:  270 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWVLGTSVLLTVASLVPLFKGGSVESKSKGFMNSEAEI 554
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AW   T  +L++ASLVPL +G S E ++   MN+ AE+
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAEL 140          
BLAST of EY665390 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.634e-21
Identity = 68/164 (41.46%), Postives = 91/164 (55.49%), Query Frame = 3
Query:   66 LATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAXXXXXXXXXXXXPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWVLGTSVLLTVASLVPLFKGGSVESKSKGFMNSEAEI 554
            +AT   ++S   A V  + RS A+   + + LP+L R   L VR               P+ P     PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AW   T  +L++ASLVPL +G S E ++   MN+ AE+
Sbjct:    1 MATMMSMSSFAGAAV--VPRSSASSFGA-RSLPALGRRA-LVVRAQTEG----------PSAP-----PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAEL 145          
BLAST of EY665390 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.740e-20
Identity = 53/106 (50.00%), Postives = 72/106 (67.92%), Query Frame = 3
Query:  243 PTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWVLGTSVLLTVASLVPLFKGGSVESKSKGFMNSEAEI 554
            PT   A P+P  K + +    +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AW L T+ + +VASL+PL +G SVESKS G  +++AE+
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAEL 204          
BLAST of EY665390 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.707e-12
Identity = 44/86 (51.16%), Postives = 51/86 (59.30%), Query Frame = 3
Query:  246 TIPKAEPQPPKKPRMSTG--FSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWVLGTSVLLTVASLVPLF 497
            T P + P PP  P        +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F
Sbjct:   47 TPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF 130          
The following BLAST results are available for this feature:
BLAST of EY665390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA2.704e-3758.94Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL1.103e-2240.46Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI6_HORVU3.548e-2153.13Low molecular mass early light-inducible protein H... [more]
ELI9_HORVU4.634e-2141.46Low molecular mass early light-inducible protein H... [more]
ELI5_HORVU8.740e-2050.00High molecular mass early light-inducible protein ... [more]
CBR_DUNBA6.707e-1251.16Carotene biosynthesis-related protein CBR, chlorop... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-D03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665390 ID=EY665390; Name=EY665390; organism=Citrus sinensis; type=EST; length=897bp
AGCACCAATTCCCGAATCCCATTTTGTTCTGTTTTCTACTTCATAAATTA
AAAATGGCCGCATCACTTGCTACTCAATCTATGCTGGCAAGTCCTGTAGC
AGCTCGTGTGACTGGTATCAGGAGATCCGGGGCAAACCAACTTTCCTCCG
TCAAGTACTTGCCTAGTCTGCGTAGAAATGTCAACTTATCCGTGCGCTGC
ACGGCAGAGGATGAGCAGCAGCAGCAGCAGAAAGATGATCAACCAACCAT
ACCGAAAGCTGAGCCTCAGCCACCAAAGAAGCCGCGGATGAGCACGGGGT
TCTCTGAGGTGTTTGCGTTCAGCGGGCCGGCACCGGAGAGGATAAACGGG
AGGCTTGCGATGATTGGGTTCGTGGCTGCATTGGGGGTGGAGATATCCAA
GGGTCAGGATGTGTTTGCCCAGTTATCAGACGGTGGGGTTGCCTGGGTCT
TGGGGACCAGTGTTTTGCTCACGGTTGCTTCCCTGGTTCCTTTGTTTAAA
GGGGGCAGCGTGGAATCTAAATCGAAAGGGTTCATGAATTCGGAAGCTGA
AATTGGGGAAAGGGAAGGTTTGCTATGCTGGGCCCTTGGTTGTTTTGGCT
TTCCACCAAGTTTGGTTAAGGGGGGGCCCCCTTGGTTTAAACCTTAATTT
TTTGTTTAAAAATGGTGAAAAAATCGGGTTTTTTTTTTTAAACAAAATTA
AGGGGGAAGGAAAAAACCCCCACGGGATAATTAAAAAATCCCTATATTTT
CCCCAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGCCCCCCCCCATAAAA
AAAAAATACAAAAGAATTATACAAAATCAACGGATGGAACAGGAAAAAAA
CCACAAAAAAGACTCCTTCTTAAAAAAAATAGGGGGAGCCCCCAACA
back to top