CV885252

Overview
NameCV885252
Unique NameCV885252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: FTSH2_ORYSJ (Cell division protease ftsH homolog 2, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2 PE=3 SV=1)

HSP 1 Score: 407.142 bits (1045), Expect = 6.624e-113
Identity = 206/221 (93.21%), Postives = 214/221 (96.83%), Query Frame = -3
Query:  227 EIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMD-GSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAENRV 886
            EIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTL+PRGQARGLTWFIP DDPTLIS+QQLFARIVGGLGGRAAEE+IFGEPEVTTGAAGDLQQITGLAKQMV TFGMS+IGPWSLMD G+QSGDVIMRMMARNSMSEKLAEDID AVKRLSD AYEIALSQIR+NREA+DKIVEVLLEKET+SGDEFRAILSEF EIP ENRV
Sbjct:  446 EIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLIPRGQARGLTWFIPMDDPTLISRQQLFARIVGGLGGRAAEEIIFGEPEVTTGAAGDLQQITGLAKQMVVTFGMSDIGPWSLMDSGAQSGDVIMRMMARNSMSEKLAEDIDTAVKRLSDEAYEIALSQIRSNREAMDKIVEVLLEKETLSGDEFRAILSEFTEIPVENRV 666          
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 400.979 bits (1029), Expect = 4.747e-111
Identity = 203/220 (92.27%), Postives = 208/220 (94.55%), Query Frame = -3
Query:  227 EIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAENRV 886
            EIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHD VQKVTL+PRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGE EVTTGA  DLQQITGLAKQMVTTFGMSEIGPWSLMD S+  DVIMRMMARNSMSEKLA DID AVK LSD+AYEIALSQIRNNREA+DKIVE+LLEKETMSGDEFRAILSEF EIP ENRV
Sbjct:  452 EIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDAVQKVTLIPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGESEVTTGAVSDLQQITGLAKQMVTTFGMSEIGPWSLMDSSEQSDVIMRMMARNSMSEKLANDIDTAVKTLSDKAYEIALSQIRNNREAMDKIVEILLEKETMSGDEFRAILSEFTEIPPENRV 671          
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: FTSH2_ARATH (Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1)

HSP 1 Score: 393.66 bits (1010), Expect = 7.579e-109
Identity = 196/220 (89.09%), Postives = 208/220 (94.55%), Query Frame = -3
Query:  227 EIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAENRV 886
            EIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHA+CGTLTPGHD VQKVTL+PRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEE+IFG+ EVTTGA GDLQQITGLA+QMVTTFGMS+IGPWSLMD S   DVIMRMMARNSMSEKLAEDID+AVK+LSD AYEIALS I+NNREA+DK+VEVLLEKET+ GDEFRAILSEF EIP ENRV
Sbjct:  459 EIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAVCGTLTPGHDAVQKVTLIPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEIIFGDSEVTTGAVGDLQQITGLARQMVTTFGMSDIGPWSLMDSSAQSDVIMRMMARNSMSEKLAEDIDSAVKKLSDSAYEIALSHIKNNREAMDKLVEVLLEKETIGGDEFRAILSEFTEIPPENRV 678          
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: FTSH6_ARATH (Cell division protease ftsH homolog 6, chloroplastic OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.812e-94
Identity = 168/216 (77.78%), Postives = 195/216 (90.28%), Query Frame = -3
Query:  242 EIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGS-QSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIP 886
            EIDDSIDRIVAGMEGT M DGKSK++VAYHEVGHAIC TLT GHDPVQKVTLVPRGQARGLTWF+P +DPTL+SKQQLFARIVGGLGGRAAE+VIFGEPE+TTGAAGDLQQ+T +A+QMVT FGMSEIGPW+L D + +  DV++RM+ARNSMSEKLAEDID+ VK++   AYE+A   +RNNREAIDK+V+VLLEKET++GDEFRAILSE+ + P
Sbjct:  456 EIDDSIDRIVAGMEGTKMIDGKSKAIVAYHEVGHAICATLTEGHDPVQKVTLVPRGQARGLTWFLPGEDPTLVSKQQLFARIVGGLGGRAAEDVIFGEPEITTGAAGDLQQVTEIARQMVTMFGMSEIGPWALTDPAVKQNDVVLRMLARNSMSEKLAEDIDSCVKKIIGDAYEVAKKHVRNNREAIDKLVDVLLEKETLTGDEFRAILSEYTDQP 671          
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: FTSH6_ORYSJ (Cell division protease ftsH homolog 6, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6 PE=3 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 2.994e-89
Identity = 160/221 (72.40%), Postives = 193/221 (87.33%), Query Frame = -3
Query:  230 EIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIP-SDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMD-GSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAENR 886
            EIDDSIDRIVAG+EGT MTDGKSK LVAYHE+GHA+C TLT GHD VQKVTL+PRGQARGLTWF+P  +DP L+S+QQ+FA IVGGLGGRAAEEV+FGEPEVTTGAAGDLQQ+T +A++MVT FGMSEIGPW+L +  +Q GDV++RM+AR+SMSE+LA DIDAAV+ + D AYE+A + +R NR AID++V+VL+EKET+ GDEFRAILSE V+I  E R
Sbjct:  454 EIDDSIDRIVAGLEGTSMTDGKSKMLVAYHEIGHAVCATLTAGHDEVQKVTLIPRGQARGLTWFLPGEEDPALVSRQQIFAGIVGGLGGRAAEEVVFGEPEVTTGAAGDLQQVTRVARRMVTAFGMSEIGPWALAEPAAQGGDVVLRMLARSSMSERLAADIDAAVRTIVDEAYEVAKAHVRRNRAAIDQLVDVLMEKETLGGDEFRAILSEHVDIGKERR 674          
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: FTSH1_SYNY3 (Cell division protease ftsH homolog 1 OS=Synechocystis sp. (strain PCC 6803) GN=slr0228 PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.888e-67
Identity = 123/222 (55.41%), Postives = 172/222 (77.48%), Query Frame = -3
Query:  227 EIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIM--RMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAENRV 886
            EIDD++DR+VAGMEGT + D KSK L+AYHEVGHAI GTL   HDPVQKVTL+PRGQA+GLTWF P+++  L +K QL ARI G +GGRAAEE +FG+ EVTTGA GDLQQ+T +A+QMVT FGMS +GP SL   S  G+V +   +M R+  SE++A  IDA V++L+++ +++A   ++  RE +D++V++L+EKET+ G+EFR I++E+ E+P + ++
Sbjct:  404 EIDDAVDRVVAGMEGTPLVDSKSKRLIAYHEVGHAIVGTLLKDHDPVQKVTLIPRGQAQGLTWFTPNEEQGLTTKAQLMARIAGAMGGRAAEEEVFGDDEVTTGAGGDLQQVTEMARQMVTRFGMSNLGPISL--ESSGGEVFLGGGLMNRSEYSEEVATRIDAQVRQLAEQGHQMARKIVQEQREVVDRLVDLLIEKETIDGEEFRQIVAEYAEVPVKEQL 623          
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: FSTH_PORYE (Cell division protease ftsH homolog OS=Porphyra yezoensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 7.176e-67
Identity = 131/220 (59.55%), Postives = 165/220 (75.00%), Query Frame = -3
Query:  233 EIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIM--RMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAEN 886
            EID SIDR+VAGMEGT + D KSK L+AYHEVGHAI G+L   HDPVQKVTL+PRGQARGLTWF PSDD +LIS+ Q+ ARIVG LGGRAAEE+IFG+ EVTTGA+ DLQQ+T +A+QMVT FGMS+IGP SL   SQ GD  +   M   +  S+++A +ID  V+ +    Y  A   I +NR  ID++V++L+EKET+ G+EFR I+ E+  IP +N
Sbjct:  405 EIDTSIDRVVAGMEGTPLIDSKSKRLIAYHEVGHAIIGSLLEHHDPVQKVTLIPRGQARGLTWFTPSDDQSLISRSQILARIVGALGGRAAEEIIFGDAEVTTGASNDLQQVTSMARQMVTRFGMSKIGPLSL--ESQGGDPFLGRGMGGGSEYSDEVATNIDKQVREIVSECYAQAKHIIIDNRVVIDRLVDLLIEKETIEGNEFRDIVKEYTAIPEKN 622          
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: FTSH_PORPU (Cell division protease ftsH homolog OS=Porphyra purpurea GN=ftsH PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.727e-66
Identity = 124/218 (56.88%), Postives = 163/218 (74.77%), Query Frame = -3
Query:  233 EIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAEN 886
            EID SIDR+VAG+EGT + D KSK L+AYHEVGHAI G+L   HDPVQKVTL+PRGQARGLTWF PSDD +LIS+ Q+ ARIVG LGGRAAEE+IFG+ EVTTGA+ DLQQ+T +A+QMVT FGMS+IGP SL        +   M   +  S+++A +ID  V+ +    Y+ A   +++NR  +D++V++L+EKET+ G+EFR I+ E+  IP +N
Sbjct:  405 EIDTSIDRVVAGLEGTPLIDSKSKRLIAYHEVGHAIIGSLLEHHDPVQKVTLIPRGQARGLTWFTPSDDQSLISRSQILARIVGALGGRAAEEIIFGDAEVTTGASNDLQQVTSMARQMVTRFGMSKIGPLSLESQGSDPFLGRGMGGGSEYSDEVATNIDKQVREIVSECYKEAKKIVKDNRVVMDRLVDLLIEKETIEGNEFRHIVKEYTAIPEKN 622          
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: FTSH_GUITH (Cell division protease ftsH homolog OS=Guillardia theta GN=ftsH PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.353e-65
Identity = 126/216 (58.33%), Postives = 159/216 (73.61%), Query Frame = -3
Query:  242 EIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIMRMMARNSM-SEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIP 886
            EID SIDR++AGMEG  + D K+K L+AYHEVGHAI GTL   HDPVQKVTLVPRGQA+GLTWF PS+D +LIS+ Q+ ARI+G LGGRAAEEV+FG PEVTTGA  DLQQ+T +A+QMVT FGMS IGP SL +   S   + R M  +S  SE +A  ID  V+ +    +   +  I++NR  IDK+V++L+EKET+ GDEFR I+ +F  +P
Sbjct:  405 EIDASIDRVIAGMEGKALVDSKTKRLIAYHEVGHAIIGTLLKHHDPVQKVTLVPRGQAKGLTWFTPSEDQSLISRSQILARIMGALGGRAAEEVVFGLPEVTTGAGNDLQQVTSMARQMVTRFGMSNIGPLSL-ESQNSDPFLGRTMGSSSQYSEDIASRIDMQVRAIIQHCHTETVQIIKDNRVVIDKLVDLLIEKETIDGDEFRQIVGDFTSLP 619          
BLAST of CV885252 vs. ExPASy Swiss-Prot
Match: FTSH_ODOSI (Cell division protease ftsH homolog OS=Odontella sinensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 6.506e-60
Identity = 117/220 (53.18%), Postives = 158/220 (71.82%), Query Frame = -3
Query:  233 EIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITGLAKQMVTTFGMSEIGPWSLMDGSQSGDVIM--RMMARNSMSEKLAEDIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPAEN 886
            E++++ DRI+ G+ G  M D K+K L+AYHEVGHAI G++   HD V+K+TL PRG A+GLTWF P +D +L+S+  L ARI+  LGGRAAE+VIFGEPEVTTGA+ DLQQ+T LA+QMVT FGMS IGP +L D S +G V +   M + +  +E +A+ ID  V+++    YE A+  + +NR  ID IVE LL+KETM GDEFR +LS +  +P +N
Sbjct:  418 EVNEAADRIIGGIAGAPMEDTKNKRLIAYHEVGHAITGSVLKSHDEVEKITLTPRGGAKGLTWFTPEEDQSLLSRSALLARIITTLGGRAAEQVIFGEPEVTTGASSDLQQVTNLARQMVTRFGMSNIGPLALEDES-TGQVFLGGNMASGSEYAENIADRIDDEVRKIITYCYEKAIEIVLDNRVVIDLIVEKLLDKETMDGDEFRELLSTYTILPNKN 636          
The following BLAST results are available for this feature:
BLAST of CV885252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
FTSH2_ORYSJ6.624e-11393.21Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH8_ARATH4.747e-11192.27Cell division protease ftsH homolog 8, chloroplast... [more]
FTSH2_ARATH7.579e-10989.09Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH6_ARATH1.812e-9477.78Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH6_ORYSJ2.994e-8972.40Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH1_SYNY31.888e-6755.41Cell division protease ftsH homolog 1 OS=Synechocy... [more]
FSTH_PORYE7.176e-6759.55Cell division protease ftsH homolog OS=Porphyra ye... [more]
FTSH_PORPU2.727e-6656.88Cell division protease ftsH homolog OS=Porphyra pu... [more]
FTSH_GUITH1.353e-6558.33Cell division protease ftsH homolog OS=Guillardia ... [more]
FTSH_ODOSI6.506e-6053.18Cell division protease ftsH homolog OS=Odontella s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_013E11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885252 ID=CV885252; Name=CV885252; organism=Citrus sinensis; type=EST; length=888bp
TTTTTTTTACGCTGAGATTTTATGCTTCAAAAATCAGGAGCAAAACTTTA
GAAATTTACTCAATCGTGACTTTTTGAGTTAGTGTACAATCCTACTTACA
TTTGATCAAGAACACATATATTATACATTCAAGTGTATGCGTTCAAAGAG
TGGCTGAAATTTCAAGTATGGATAATATTAATGCCACTCAAACAGATACA
GATAATGGTGCTGGAACAGCTGGAGGGACCCTATTTTCAGCTGGGATTTC
GACAAACTCTGAGAGGATTGCCCGGAATTCATCCCCTGACATTGTTTCCT
TCTCAAGAAGAACTTCCACGATCTTGTCAATGGCTTCACGGTTGTTCCTT
ATTTGGCTCAACGCAATCTCATAGGCACGGTCTGATAGTCTCTTGACTGC
AGCATCAATGTCTTCAGCAAGCTTCTCAGACATTGAGTTCCTTGCCATCA
TTCTCATGATGACATCACCACTTTGTGATCCGTCCATGAGCGACCATGGG
CCAATTTCAGACATTCCAAATGTGGTTACCATCTGTTTGGCCAAACCAGT
GATCTGCTGCAAATCACCAGCTGCTCCTGTTGTCACTTCAGGCTCTCCAA
AAATCACTTCCTCAGCAGCTCTACCACCGAGTCCACCAACAATTCTTGCA
AAGAGCTGCTGCTTCGATATCAAGGTGGGGTCATCTGAAGGGATGAACCA
GGTAAGACCTCTTGCCTGACCACGTGGAACAAGGGTGACTTTTTGAACGG
GATCGTGTCCTGGAGTCAAAGTTCCGCATATTGCGTGGCCAACTTCATGG
TATGCAACAAGACTTTTACTCTTCCCATCTGTCATGACAGTTCCTTCCAT
TCCAGCCACAATCCTATCAATCGAATCATCAATCTCTT
back to top