CV885251

Overview
NameCV885251
Unique NameCV885251
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885251 vs. ExPASy Swiss-Prot
Match: FTSH2_ARATH (Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.395e-69
Identity = 153/234 (65.38%), Postives = 166/234 (70.94%), Query Frame = 2
Query:   14 MEASSACLVGNILTTHKT-KTNLSKDFHGRHLLFNSSFRSLEKKPKVAVVKASLS-EKQHEGRRGFLKKLVGNVGVGTALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSKAKFQMEPNTGVTFDD 709
            M ASSACLVGN L+ + T K  LSK F GR     +SF S+ +  KV VVKASL  +K+ EGRR FLK L+GN GVG  L+ SGKA ADEQGVSSSRMSYSRFLEYLDKDRV KVDL+ENGTIAIVEA+SPELGNRV+RVRVQLPGLSQELLQK R KNIDFAAHNAQED GS+LFNLIGN                                   QSKAKFQMEPNTGVTFDD
Sbjct:    1 MAASSACLVGNGLSVNTTTKQRLSKHFSGRQ----TSFSSVIRTSKVNVVKASLDGKKKQEGRRDFLKILLGNAGVG--LVASGKANADEQGVSSSRMSYSRFLEYLDKDRVNKVDLYENGTIAIVEAVSPELGNRVERVRVQLPGLSQELLQKLRAKNIDFAAHNAQEDQGSVLFNLIGNLAFPALLIGGLFLLSRRSGGGMGGPGGPGNPLQFGQSKAKFQMEPNTGVTFDD 228          
BLAST of CV885251 vs. ExPASy Swiss-Prot
Match: FTSH8_ARATH (Cell division protease ftsH homolog 8, chloroplastic OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.228e-66
Identity = 142/234 (60.68%), Postives = 154/234 (65.81%), Query Frame = 2
Query:   14 MEASSACLVGNILTTHKTKTNLSKDFHGRHLLFNSSFRSLEKKPKVAVVKASLSEKQHEGRRGFLKKLVGNVGVGTALLGSGKAYADEQG--VSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSKAKFQMEPNTGVTFDD 709
            M ASSACL+GN L+ + TK    K               L++  KV VVKASL EK+HEGRRGF K L+GN   G  LL SG A ADEQG  VSSSRMSYSRFLEYLDK RV+KVDL+ENGTIAIVEA+SPELGNR+QRVRVQLPGLSQELLQK R KNIDFAAHNAQED GS + NLIGN                                   QSKAKFQMEPNTGVTFDD
Sbjct:    1 MAASSACLLGNGLSVYTTKQRFQK-------------LGLDRTSKVTVVKASLDEKKHEGRRGFFKLLLGNAAAGVGLLASGNANADEQGQGVSSSRMSYSRFLEYLDKGRVEKVDLYENGTIAIVEAVSPELGNRIQRVRVQLPGLSQELLQKLRAKNIDFAAHNAQEDQGSPILNLIGNLAFPVILIGGLFLLSRRSSGGMGGPGGPGFPLQIGQSKAKFQMEPNTGVTFDD 221          
BLAST of CV885251 vs. ExPASy Swiss-Prot
Match: FTSH2_ORYSJ (Cell division protease ftsH homolog 2, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH2 PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 5.005e-59
Identity = 126/185 (68.11%), Postives = 135/185 (72.97%), Query Frame = 2
Query:  158 VKASLSEKQHEGRRGFLKKLVGNVGVGT-ALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSKAKFQMEPNTGVTFDD 709
            V ASL  K ++ RR FLK  +GN+GVG   LLG+ +A A+EQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQK REKNIDFAAH+ QEDSGSLLFNLIGN                                   QS+AKFQMEPNTGVTFDD
Sbjct:   31 VTASLEHKTNDARRKFLKLALGNLGVGLPTLLGAKRALAEEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKLREKNIDFAAHSNQEDSGSLLFNLIGNLAFPLILIGGLFLLSRRAQGGLGGPNGPGFPLGFGQSRAKFQMEPNTGVTFDD 215          
BLAST of CV885251 vs. ExPASy Swiss-Prot
Match: FTSH6_ORYSJ (Cell division protease ftsH homolog 6, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH6 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.794e-28
Identity = 78/196 (39.80%), Postives = 102/196 (52.04%), Query Frame = 2
Query:  125 RSLEKKPKVAVVKASLSEKQHEGRRGFLKKLVGNVGVGTALLGSGKAYADE-QGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSKAKFQMEPNTGVTFDD 709
            R+     K+    +S SE     RR  L+     +G+G       +A A   + V+S+RMSYSRFLEYLD   VKKVD FENGT+A+ E       +RV RV+VQLPGL  EL++K R+K +DFAAH  +  +G +L +L+ N                                   +SKAKFQMEP TGVTFDD
Sbjct:   30 RTTPPPAKITPPSSSSSEAAGLSRRRLLQSAGLGLGLGLTAARPARAEATAPEEVTSNRMSYSRFLEYLDAGAVKKVDFFENGTVAVAEVDDAAALSRVHRVKVQLPGLPAELVRKLRDKGVDFAAHPVEPSAGVMLLDLLVN---FGFPLLFVASLLWRSPTMNNPGGGPSLPFGLGKSKAKFQMEPKTGVTFDD 222          
BLAST of CV885251 vs. ExPASy Swiss-Prot
Match: FTSH6_ARATH (Cell division protease ftsH homolog 6, chloroplastic OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.277e-26
Identity = 69/160 (43.12%), Postives = 94/160 (58.75%), Query Frame = 2
Query:  233 VGTALLGSGKAYADEQ-GVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSKAKFQMEPNTGVTFDD 709
            +GT L    KA  +     +S+RMSYSRFL++L ++ VKKVDL ENGT+AIVE  +P +G ++QRVRV LPGL  +L+++ +EKN+DFAAH    + G+ L N +GN                                   +SKAKFQMEPNTG+TF+D
Sbjct:   71 LGTVLAHPAKAEPEAPIEATSNRMSYSRFLQHLKENEVKKVDLIENGTVAIVEISNPVVG-KIQRVRVNLPGLPVDLVREMKEKNVDFAAHPMNVNWGAFLLNFLGN----LGFPLILLVSLLLTSSSRRNPAGPNLPFGLGRSKAKFQMEPNTGITFED 225          
BLAST of CV885251 vs. ExPASy Swiss-Prot
Match: FTSH_GUITH (Cell division protease ftsH homolog OS=Guillardia theta GN=ftsH PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 62/144 (43.06%), Postives = 83/144 (57.64%), Query Frame = 2
Query:  278 QGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSKAKFQMEPNTGVTFDD 709
            + ++SSRM+Y RFLEYLD   VKKVDL++ G  AIVEAI PELGNR+QR+RV+LP  + EL+ K R+ N+D  AH   + + +  ++LIGN                                   +SKA+FQME  TGVTF+D
Sbjct:   36 KNIASSRMTYGRFLEYLDLGWVKKVDLYDEGHTAIVEAIGPELGNRIQRIRVELPATAPELITKLRKANVDLDAHATNDSTPA--WSLIGN---LIFPILLIAGLAFLFRRSSNLPGGPGQAMNFGKSKARFQMEAKTGVTFND 174          
BLAST of CV885251 vs. ExPASy Swiss-Prot
Match: FTSH_PORPU (Cell division protease ftsH homolog OS=Porphyra purpurea GN=ftsH PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 62/142 (43.66%), Postives = 80/142 (56.34%), Query Frame = 2
Query:  284 VSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSKAKFQMEPNTGVTFDD 709
            ++SSRM+Y RFLEYLD   VK+VDL+EN   AIVEA+ PELGNRVQR+RV+LP  + EL+ K R+ N+D  AH  +  S S ++ L+GN                                   +SKA FQME  TGV F+D
Sbjct:   38 IASSRMTYGRFLEYLDMGWVKRVDLYENNHTAIVEAVGPELGNRVQRIRVELPASAPELITKLRKANVDLDAHPPK--STSAVWGLLGN---LLFPLILVGGLAFLFRRSNNASGGPGQAMSFGKSKALFQMEAKTGVVFND 174          
BLAST of CV885251 vs. ExPASy Swiss-Prot
Match: FSTH_PORYE (Cell division protease ftsH homolog OS=Porphyra yezoensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 62/142 (43.66%), Postives = 80/142 (56.34%), Query Frame = 2
Query:  284 VSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSKAKFQMEPNTGVTFDD 709
            ++SSRM+Y RFLEYLD   VK+VDL+EN   AIVEA+ PELGNRVQR+RV+LP  + EL+ K R+ N+D  AH  +  S S ++ L+GN                                   +SKA FQME  TGV F+D
Sbjct:   38 IASSRMTYGRFLEYLDMGWVKRVDLYENNHTAIVEAVGPELGNRVQRIRVELPASAPELITKLRKANVDLDAHPPK--STSAVWGLLGN---LLFPLLLVGGLAFLFRRSNNASGGPGQAMSFGKSKALFQMEAKTGVVFND 174          
BLAST of CV885251 vs. ExPASy Swiss-Prot
Match: FTSH_ODOSI (Cell division protease ftsH homolog OS=Odontella sinensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17
Identity = 53/142 (37.32%), Postives = 78/142 (54.93%), Query Frame = 2
Query:  284 VSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSKAKFQMEPNTGVTFDD 709
            V SS+M+Y RFLEYL+   V +VDL++N   AIV+A SPELGNR Q +RV++P  + +L+QK +E NIDF AH A++   ++  N++ N                                   +S A+F+  P+TGV+F D
Sbjct:   50 VISSKMTYGRFLEYLEMGWVNQVDLYDNSRNAIVQASSPELGNRPQTIRVEIPVGASQLIQKLKEYNIDFDAHPAEQK--NIFVNILSN--ILLPIIFITGLVYLFQNSENFGGGSGQSPMSLGKSTARFERRPDTGVSFKD 187          
BLAST of CV885251 vs. ExPASy Swiss-Prot
Match: FTSH_CYACA (Cell division protease ftsH homolog OS=Cyanidium caldarium GN=ftsH PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.379e-16
Identity = 51/141 (36.17%), Postives = 71/141 (50.35%), Query Frame = 2
Query:  287 SSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSKAKFQMEPNTGVTFDD 709
            SSSRM+Y RFLEY+D + VKKVDL++N   AIV+ I+P++    Q VRV+LP  S EL+ K + K IDF AH +  +      NL+                                     ++KA+F ME  TG+ F+D
Sbjct:   37 SSSRMTYGRFLEYIDMNWVKKVDLYDNARTAIVDIINPDIKGEEQLVRVELPTFSSELVSKLKNKLIDFDAHPSSSN-----VNLVSWLSNLLLPLILIITLFFFFRRGNKSSSGPGQAFNFGKAKARFHMEAKTGIVFED 172          
The following BLAST results are available for this feature:
BLAST of CV885251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
FTSH2_ARATH2.395e-6965.38Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH8_ARATH4.228e-6660.68Cell division protease ftsH homolog 8, chloroplast... [more]
FTSH2_ORYSJ5.005e-5968.11Cell division protease ftsH homolog 2, chloroplast... [more]
FTSH6_ORYSJ7.794e-2839.80Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH6_ARATH4.277e-2643.13Cell division protease ftsH homolog 6, chloroplast... [more]
FTSH_GUITH3.389e-2343.06Cell division protease ftsH homolog OS=Guillardia ... [more]
FTSH_PORPU3.747e-2243.66Cell division protease ftsH homolog OS=Porphyra pu... [more]
FSTH_PORYE3.747e-2243.66Cell division protease ftsH homolog OS=Porphyra ye... [more]
FTSH_ODOSI1.247e-1737.32Cell division protease ftsH homolog OS=Odontella s... [more]
FTSH_CYACA1.379e-1636.17Cell division protease ftsH homolog OS=Cyanidium c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013E11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885251 ID=CV885251; Name=CV885251; organism=Citrus sinensis; type=EST; length=710bp
GCTTTCTTTCAAGATGGAAGCTTCATCAGCTTGCCTTGTAGGGAATATTT
TGACAACACACAAGACTAAAACAAATTTGAGCAAGGACTTCCATGGTAGG
CATCTTCTGTTTAACTCGAGTTTTCGATCATTGGAAAAGAAGCCAAAAGT
AGCCGTTGTAAAGGCATCTTTGAGCGAGAAGCAGCATGAAGGAAGAAGAG
GGTTTCTTAAGAAGTTGGTTGGAAATGTTGGAGTTGGTACTGCTTTGTTG
GGGAGTGGGAAAGCCTATGCCGATGAACAGGGGGTTTCTTCCTCTAGGAT
GTCTTACTCTAGGTTCTTGGAGTATCTTGATAAGGACAGGGTGAAGAAGG
TTGATTTGTTTGAGAATGGTACCATAGCTATTGTGGAGGCTATTTCCCCT
GAGTTGGGTAACCGGGTGCAACGAGTTCGCGTTCAACTTCCAGGTCTAAG
TCAGGAGCTTCTCCAGAAATTCAGGGAGAAGAACATTGATTTTGCTGCCC
ATAATGCTCAAGAGGACTCAGGATCATTGTTGTTTAACTTGATTGGGAAT
CTGGCTTTCCCACTTATCTTAATTGGAGGGCTGTTCCTTCTCTCAAGGCG
TTCATCTGGTGGAATGGGCGGTCCTGGTGGGCCTGGTTTCCCCCTTGCCT
TTGGTCAGTCCAAAGCTAAATTCCAGATGGAACCAAATACTGGTGTGACA
TTTGATGATG
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