CV885246

Overview
NameCV885246
Unique NameCV885246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885246 vs. ExPASy Swiss-Prot
Match: TF2B_SOYBN (Transcription initiation factor IIB OS=Glycine max GN=TFIIB1 PE=2 SV=1)

HSP 1 Score: 373.244 bits (957), Expect = 1.114e-102
Identity = 191/210 (90.95%), Postives = 194/210 (92.38%), Query Frame = -3
Query:  290 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 919
            R LI AFKTIATMSDRLGLVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLE G +VEMGTIHAGDFMRRFCSNL MNN           KSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDIS+ATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP
Sbjct:  104 RALIQAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLENGNAVEMGTIHAGDFMRRFCSNLCMNNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 313          
BLAST of CV885246 vs. ExPASy Swiss-Prot
Match: TF2B2_ARATH (Transcription initiation factor IIB-2 OS=Arabidopsis thaliana GN=TFIIB2 PE=2 SV=1)

HSP 1 Score: 369.007 bits (946), Expect = 2.102e-101
Identity = 189/210 (90.00%), Postives = 195/210 (92.86%), Query Frame = -3
Query:  290 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 919
            RGLI+AFKTIATM+DRLGLVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQ VEMGTIHAGDFMRRFCSNLGM N           KSEEFDIRRSPISIAAAVIYIITQLSD+KKPL+DISVATGVAEGTIRNSYKDLYPH+SKIIP WYAKEEDLKNL SP
Sbjct:  103 RGLIVAFKTIATMADRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEEFDIRRSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEGTIRNSYKDLYPHLSKIIPAWYAKEEDLKNLQSP 312          
BLAST of CV885246 vs. ExPASy Swiss-Prot
Match: TF2B1_ARATH (Transcription initiation factor IIB-1 OS=Arabidopsis thaliana GN=TFIIB1 PE=1 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 3.839e-95
Identity = 176/210 (83.81%), Postives = 188/210 (89.52%), Query Frame = -3
Query:  290 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 919
            RGLI AFKTIATMS+RLGLVATIKDRANE+YK++EDQKSSRGRNQDAL AACLYIACRQEDKPRT+KEIC +ANGATKKEIGRAK+YIVK LGLE GQSV++GTIHAGDFMRRFCSNL M+N           KSEEFDIRRSPISIAA VIYIITQLSDDKK LKDIS ATGVAEGTIRNSYKDLYPH+SKI P+WYAKEEDLKNL SP
Sbjct:  103 RGLIQAFKTIATMSERLGLVATIKDRANELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGATKKEIGRAKDYIVKTLGLEPGQSVDLGTIHAGDFMRRFCSNLAMSNHAVKAAQEAVQKSEEFDIRRSPISIAAVVIYIITQLSDDKKTLKDISHATGVAEGTIRNSYKDLYPHLSKIAPSWYAKEEDLKNLSSP 312          
BLAST of CV885246 vs. ExPASy Swiss-Prot
Match: TF2B_ORYSJ (Transcription initiation factor IIB OS=Oryza sativa subsp. japonica GN=TFIIB PE=1 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.905e-94
Identity = 174/210 (82.86%), Postives = 189/210 (90.00%), Query Frame = -3
Query:  290 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 919
            R LILAF+TIA M+DRLGLVATIKDRANEIYKKVED KS RGRNQDA+LAACLYIACRQED+PRTVKEICSVANGATKKEIGRAKE+IVKQL +E GQS+EMGTIHAGDF+RRFCS LGMNN           +SEE DIRRSPISIAAAVIY+ITQLSDDKKPLKDIS+ATGVAEGTIRNSYKDLYP+ S++IPN YAKEEDLKNLC+P
Sbjct:  103 RSLILAFRTIANMADRLGLVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEELDIRRSPISIAAAVIYMITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAKEEDLKNLCTP 312          
BLAST of CV885246 vs. ExPASy Swiss-Prot
Match: TF2B_DROME (Transcription initiation factor IIB OS=Drosophila melanogaster GN=TfIIB PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.609e-40
Identity = 98/197 (49.75%), Postives = 129/197 (65.48%), Query Frame = -3
Query:  335 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP 919
            R LI AFK I++M+DR+ L  TI DRAN ++K+V D K+ +GR+ DA  +ACLYIACRQE  PRT KEIC+V+   +KKEIGR  +  +K   LET  SV++  I   DFM RFC+NL + N           K+ E DI   RSPIS+AAA IY+ +Q S+ K+  K+I    GVA+ TIR SYK +YPH +K+ P
Sbjct:  111 RSLISAFKEISSMADRINLPKTIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTLK--ALET--SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPGRSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFP 300          
BLAST of CV885246 vs. ExPASy Swiss-Prot
Match: TF2B_DROVI (Transcription initiation factor IIB OS=Drosophila virilis GN=TfIIB PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 6.020e-40
Identity = 98/197 (49.75%), Postives = 129/197 (65.48%), Query Frame = -3
Query:  335 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP 919
            R LI AFK I++M+DR+ L  TI DRAN ++K+V D K+ +GR+ DA  +ACLYIACRQE  PRT KEIC+V+   +KKEIGR  +  +K   LET  SV++  I   DFM RFC+NL + N           K+ E DI   RSPIS+AAA IY+ +Q S+ K+  K+I    GVA+ TIR SYK +YPH +K+ P
Sbjct:   89 RSLISAFKEISSMADRINLPKTIVDRANTLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTLK--ALET--SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPGRSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFP 278          
BLAST of CV885246 vs. ExPASy Swiss-Prot
Match: TF2B_XENLA (Transcription initiation factor IIB OS=Xenopus laevis GN=gtf2b PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.135e-38
Identity = 91/197 (46.19%), Postives = 121/197 (61.42%), Query Frame = -3
Query:  335 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP 919
            R ++ AFK I  MSDR+ L   I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE  PRT KEIC+V+   +KKEIGR  + I+K L         +  I  GDFM RFCSNLG+             K+ E D+   RSPIS+AAA IY+ +Q S +K+  K+I    GVA+ TIR SY+ +YP    + P
Sbjct:  112 RAMMNAFKEITNMSDRINLPRNIIDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKAL------ETNVDLITTGDFMSRFCSNLGLTKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFP 301          
BLAST of CV885246 vs. ExPASy Swiss-Prot
Match: TF2B_RAT (Transcription initiation factor IIB OS=Rattus norvegicus GN=Gtf2b PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.611e-38
Identity = 94/198 (47.47%), Postives = 126/198 (63.64%), Query Frame = -3
Query:  332 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPN 919
            R ++ AFK I TM+DR+ L   I DR N ++K+V +QKS +GR  DA+ +ACLYIACRQE  PRT KEIC+V+   +KKEIGR  + I+K   LET  SV++  I  GDFM RFCSNL +             K+ E D+   RSPIS+AAA IY+ +Q S +K+  K+I    GVA+ TIR SY+ +YP    + P+
Sbjct:  112 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPS 302          
BLAST of CV885246 vs. ExPASy Swiss-Prot
Match: TF2B_MOUSE (Transcription initiation factor IIB OS=Mus musculus GN=Gtf2b PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.611e-38
Identity = 94/198 (47.47%), Postives = 126/198 (63.64%), Query Frame = -3
Query:  332 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPN 919
            R ++ AFK I TM+DR+ L   I DR N ++K+V +QKS +GR  DA+ +ACLYIACRQE  PRT KEIC+V+   +KKEIGR  + I+K   LET  SV++  I  GDFM RFCSNL +             K+ E D+   RSPIS+AAA IY+ +Q S +K+  K+I    GVA+ TIR SY+ +YP    + P+
Sbjct:  112 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPS 302          
BLAST of CV885246 vs. ExPASy Swiss-Prot
Match: TF2B_PONAB (Transcription initiation factor IIB OS=Pongo abelii GN=GTF2B PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.255e-37
Identity = 94/197 (47.72%), Postives = 125/197 (63.45%), Query Frame = -3
Query:  335 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP 919
            R ++ AFK I TM+DR+ L   I DR N ++K+V +QKS +GR  DA+ +ACLYIACRQE  PRT KEIC+V+   +KKEIGR  + I+K   LET  SV++  I  GDFM RFCSNL +             K+ E D+   RSPIS+AAA IY+ +Q S +K+  K+I    GVA+ TIR SY+ +YP    + P
Sbjct:  112 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFP 301          
The following BLAST results are available for this feature:
BLAST of CV885246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
TF2B_SOYBN1.114e-10290.95Transcription initiation factor IIB OS=Glycine max... [more]
TF2B2_ARATH2.102e-10190.00Transcription initiation factor IIB-2 OS=Arabidops... [more]
TF2B1_ARATH3.839e-9583.81Transcription initiation factor IIB-1 OS=Arabidops... [more]
TF2B_ORYSJ1.905e-9482.86Transcription initiation factor IIB OS=Oryza sativ... [more]
TF2B_DROME4.609e-4049.75Transcription initiation factor IIB OS=Drosophila ... [more]
TF2B_DROVI6.020e-4049.75Transcription initiation factor IIB OS=Drosophila ... [more]
TF2B_XENLA1.135e-3846.19Transcription initiation factor IIB OS=Xenopus lae... [more]
TF2B_RAT9.611e-3847.47Transcription initiation factor IIB OS=Rattus norv... [more]
TF2B_MOUSE9.611e-3847.47Transcription initiation factor IIB OS=Mus musculu... [more]
TF2B_PONAB1.255e-3747.72Transcription initiation factor IIB OS=Pongo abeli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013E08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885246 ID=CV885246; Name=CV885246; organism=Citrus sinensis; type=EST; length=921bp
TGTAATAAATTAAGCATAAATTGAAAAATAAACTTGTATTAGCTCCTCTC
TGTCTCTCTCCCCCTTCTCTCTGTCTCTCTCTCTTCACTTTTTTTGACTT
TTTGTCAATATTTGTAAATTAAAGGTTGCAATGCAGTCAACTGCACAAAG
ACAAAACAGTCAAGAAAATAAGTACGAAAATCCTCGTAAATAGGATGCTG
ACAGATTCTGAATACATCAACGTGAGGGCAGTTCAAACCACTCAAGATGC
TTGTTTCACGGTGTTGTTATTCATGCGCTCTACATTTTACGGGCTGCAAA
GGTTTTTAAGATCCTCTTCCTTGGCATACCAGTTTGGTATTATCTTTGAG
ACATGAGGATAAAGATCCTTGTACGAATTTCTGATTGTCCCCTCAGCAAC
TCCAGTAGCAACAGAAATATCTTTGAGCGGCTTCTTGTCATCTGAAAGCT
GAGTTATAATATAAATAACTGCAGCTGCAATTGATATTGGGCTCCTCCTT
ATATCAAACTCCTCGGACTTCTGAACAGCTTCTTGGGCAGCTTTAACAGC
TTGATTATTCATACCCAAATTGGAACAGAAGCGCCTCATAAAGTCCCCAG
CATGTATAGTTCCCATCTCCACTGACTGACCAGTCTCCAAACCCAGCTGT
TTCACAATGTATTCTTTTGCTCGGCCAATTTCCTTCTTTGTAGCTCCATT
GGCGACAGAGCAGATTTCCTTAACAGTGCGTGGCTTGTCTTCTTGTCGAC
AAGCAATGTACAGGCAAGCAGCCAATAATGCGTCTTGATTTCTGCCTCTA
CTAGACTTTTGATCTTCCACCTTCTTATATATCTCATTTGCCCGATCCTT
AATGGTTGCAACGAGGCCTAACCTATCAGACATGGTAGCAATTGTTTTAA
AAGCCAAAATCAAGCCGCGAT
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