CV885246
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV885246 vs. ExPASy Swiss-Prot
Match: TF2B_SOYBN (Transcription initiation factor IIB OS=Glycine max GN=TFIIB1 PE=2 SV=1) HSP 1 Score: 373.244 bits (957), Expect = 1.114e-102 Identity = 191/210 (90.95%), Postives = 194/210 (92.38%), Query Frame = -3 Query: 290 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 919 R LI AFKTIATMSDRLGLVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLE G +VEMGTIHAGDFMRRFCSNL MNN KSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDIS+ATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP Sbjct: 104 RALIQAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLENGNAVEMGTIHAGDFMRRFCSNLCMNNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 313
BLAST of CV885246 vs. ExPASy Swiss-Prot
Match: TF2B2_ARATH (Transcription initiation factor IIB-2 OS=Arabidopsis thaliana GN=TFIIB2 PE=2 SV=1) HSP 1 Score: 369.007 bits (946), Expect = 2.102e-101 Identity = 189/210 (90.00%), Postives = 195/210 (92.86%), Query Frame = -3 Query: 290 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 919 RGLI+AFKTIATM+DRLGLVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQ VEMGTIHAGDFMRRFCSNLGM N KSEEFDIRRSPISIAAAVIYIITQLSD+KKPL+DISVATGVAEGTIRNSYKDLYPH+SKIIP WYAKEEDLKNL SP Sbjct: 103 RGLIVAFKTIATMADRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEEFDIRRSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEGTIRNSYKDLYPHLSKIIPAWYAKEEDLKNLQSP 312
BLAST of CV885246 vs. ExPASy Swiss-Prot
Match: TF2B1_ARATH (Transcription initiation factor IIB-1 OS=Arabidopsis thaliana GN=TFIIB1 PE=1 SV=1) HSP 1 Score: 348.206 bits (892), Expect = 3.839e-95 Identity = 176/210 (83.81%), Postives = 188/210 (89.52%), Query Frame = -3 Query: 290 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 919 RGLI AFKTIATMS+RLGLVATIKDRANE+YK++EDQKSSRGRNQDAL AACLYIACRQEDKPRT+KEIC +ANGATKKEIGRAK+YIVK LGLE GQSV++GTIHAGDFMRRFCSNL M+N KSEEFDIRRSPISIAA VIYIITQLSDDKK LKDIS ATGVAEGTIRNSYKDLYPH+SKI P+WYAKEEDLKNL SP Sbjct: 103 RGLIQAFKTIATMSERLGLVATIKDRANELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGATKKEIGRAKDYIVKTLGLEPGQSVDLGTIHAGDFMRRFCSNLAMSNHAVKAAQEAVQKSEEFDIRRSPISIAAVVIYIITQLSDDKKTLKDISHATGVAEGTIRNSYKDLYPHLSKIAPSWYAKEEDLKNLSSP 312
BLAST of CV885246 vs. ExPASy Swiss-Prot
Match: TF2B_ORYSJ (Transcription initiation factor IIB OS=Oryza sativa subsp. japonica GN=TFIIB PE=1 SV=1) HSP 1 Score: 345.895 bits (886), Expect = 1.905e-94 Identity = 174/210 (82.86%), Postives = 189/210 (90.00%), Query Frame = -3 Query: 290 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 919 R LILAF+TIA M+DRLGLVATIKDRANEIYKKVED KS RGRNQDA+LAACLYIACRQED+PRTVKEICSVANGATKKEIGRAKE+IVKQL +E GQS+EMGTIHAGDF+RRFCS LGMNN +SEE DIRRSPISIAAAVIY+ITQLSDDKKPLKDIS+ATGVAEGTIRNSYKDLYP+ S++IPN YAKEEDLKNLC+P Sbjct: 103 RSLILAFRTIANMADRLGLVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEELDIRRSPISIAAAVIYMITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAKEEDLKNLCTP 312
BLAST of CV885246 vs. ExPASy Swiss-Prot
Match: TF2B_DROME (Transcription initiation factor IIB OS=Drosophila melanogaster GN=TfIIB PE=1 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 4.609e-40 Identity = 98/197 (49.75%), Postives = 129/197 (65.48%), Query Frame = -3 Query: 335 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP 919 R LI AFK I++M+DR+ L TI DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT KEIC+V+ +KKEIGR + +K LET SV++ I DFM RFC+NL + N K+ E DI RSPIS+AAA IY+ +Q S+ K+ K+I GVA+ TIR SYK +YPH +K+ P Sbjct: 111 RSLISAFKEISSMADRINLPKTIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTLK--ALET--SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPGRSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFP 300
BLAST of CV885246 vs. ExPASy Swiss-Prot
Match: TF2B_DROVI (Transcription initiation factor IIB OS=Drosophila virilis GN=TfIIB PE=3 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 6.020e-40 Identity = 98/197 (49.75%), Postives = 129/197 (65.48%), Query Frame = -3 Query: 335 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP 919 R LI AFK I++M+DR+ L TI DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT KEIC+V+ +KKEIGR + +K LET SV++ I DFM RFC+NL + N K+ E DI RSPIS+AAA IY+ +Q S+ K+ K+I GVA+ TIR SYK +YPH +K+ P Sbjct: 89 RSLISAFKEISSMADRINLPKTIVDRANTLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTLK--ALET--SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPGRSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFP 278
BLAST of CV885246 vs. ExPASy Swiss-Prot
Match: TF2B_XENLA (Transcription initiation factor IIB OS=Xenopus laevis GN=gtf2b PE=2 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 1.135e-38 Identity = 91/197 (46.19%), Postives = 121/197 (61.42%), Query Frame = -3 Query: 335 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP 919 R ++ AFK I MSDR+ L I DR N ++K+V +QKS +GR+ DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K L + I GDFM RFCSNLG+ K+ E D+ RSPIS+AAA IY+ +Q S +K+ K+I GVA+ TIR SY+ +YP + P Sbjct: 112 RAMMNAFKEITNMSDRINLPRNIIDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILKAL------ETNVDLITTGDFMSRFCSNLGLTKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFP 301
BLAST of CV885246 vs. ExPASy Swiss-Prot
Match: TF2B_RAT (Transcription initiation factor IIB OS=Rattus norvegicus GN=Gtf2b PE=2 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 9.611e-38 Identity = 94/198 (47.47%), Postives = 126/198 (63.64%), Query Frame = -3 Query: 332 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPN 919 R ++ AFK I TM+DR+ L I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K LET SV++ I GDFM RFCSNL + K+ E D+ RSPIS+AAA IY+ +Q S +K+ K+I GVA+ TIR SY+ +YP + P+ Sbjct: 112 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPS 302
BLAST of CV885246 vs. ExPASy Swiss-Prot
Match: TF2B_MOUSE (Transcription initiation factor IIB OS=Mus musculus GN=Gtf2b PE=1 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 9.611e-38 Identity = 94/198 (47.47%), Postives = 126/198 (63.64%), Query Frame = -3 Query: 332 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPN 919 R ++ AFK I TM+DR+ L I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K LET SV++ I GDFM RFCSNL + K+ E D+ RSPIS+AAA IY+ +Q S +K+ K+I GVA+ TIR SY+ +YP + P+ Sbjct: 112 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPS 302
BLAST of CV885246 vs. ExPASy Swiss-Prot
Match: TF2B_PONAB (Transcription initiation factor IIB OS=Pongo abelii GN=GTF2B PE=2 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 1.255e-37 Identity = 94/197 (47.72%), Postives = 125/197 (63.45%), Query Frame = -3 Query: 335 RGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP 919 R ++ AFK I TM+DR+ L I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K LET SV++ I GDFM RFCSNL + K+ E D+ RSPIS+AAA IY+ +Q S +K+ K+I GVA+ TIR SY+ +YP + P Sbjct: 112 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFP 301 The following BLAST results are available for this feature:
BLAST of CV885246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >CV885246 ID=CV885246; Name=CV885246; organism=Citrus sinensis; type=EST; length=921bpback to top |