CV885245
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B2_ARATH (Transcription initiation factor IIB-2 OS=Arabidopsis thaliana GN=TFIIB2 PE=2 SV=1) HSP 1 Score: 444.506 bits (1142), Expect = 3.828e-124 Identity = 218/242 (90.08%), Postives = 227/242 (93.80%), Query Frame = 1 Query: 172 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEVDI 897 M+DAFCSDCK+HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL+TVI+KPNG+SG+FLSSSLGRWQNRGSNPDRGLI+AFKTIATM+DRLGLVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQ VEMGTIHAGDFMRRFCSNLGM N SEE DI Sbjct: 1 MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLTTVISKPNGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEEFDI 242
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_SOYBN (Transcription initiation factor IIB OS=Glycine max GN=TFIIB1 PE=2 SV=1) HSP 1 Score: 426.402 bits (1095), Expect = 1.079e-118 Identity = 214/243 (88.07%), Postives = 219/243 (90.12%), Query Frame = 1 Query: 172 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG-EFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEVDI 897 M+DAFCSDCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP RVGGP+NPLL DGGLSTVIAKPNG G EFLSSSLGRWQNRGSNPDR LI AFKTIATMSDRLGLVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLE G +VEMGTIHAGDFMRRFCSNL MNN SEE DI Sbjct: 1 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVGGPSNPLLTDGGLSTVIAKPNGGGGGEFLSSSLGRWQNRGSNPDRALIQAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLENGNAVEMGTIHAGDFMRRFCSNLCMNNQAVKAAQEAVQKSEEFDI 243
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_ORYSJ (Transcription initiation factor IIB OS=Oryza sativa subsp. japonica GN=TFIIB PE=1 SV=1) HSP 1 Score: 420.239 bits (1079), Expect = 7.730e-117 Identity = 204/242 (84.30%), Postives = 218/242 (90.08%), Query Frame = 1 Query: 172 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEVDI 897 M+D+FC DCKKHTEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVGGPTNPLL DGGLSTVIAKPNGA GEFLSSSLGRWQNRGSNPDR LILAF+TIA M+DRLGLVATIKDRANEIYKKVED KS RGRNQDA+LAACLYIACRQED+PRTVKEICSVANGATKKEIGRAKE+IVKQL +E GQS+EMGTIHAGDF+RRFCS LGMNN SEE+DI Sbjct: 1 MSDSFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESSDNDPVRVGGPTNPLLTDGGLSTVIAKPNGAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLGLVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEELDI 242
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B1_ARATH (Transcription initiation factor IIB-1 OS=Arabidopsis thaliana GN=TFIIB1 PE=1 SV=1) HSP 1 Score: 401.364 bits (1030), Expect = 3.716e-111 Identity = 195/242 (80.58%), Postives = 215/242 (88.84%), Query Frame = 1 Query: 172 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEVDI 897 M+DA+C+DCKK TE+V DHSAGDT+CSECGLVLESHSIDETSEWRTFANES ++DP RVGGPTNPLLAD L+TVIAKPNG+SG+FLSSSLGRWQNR SN DRGLI AFKTIATMS+RLGLVATIKDRANE+YK++EDQKSSRGRNQDAL AACLYIACRQEDKPRT+KEIC +ANGATKKEIGRAK+YIVK LGLE GQSV++GTIHAGDFMRRFCSNL M+N SEE DI Sbjct: 1 MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVGGPTNPLLADSALTTVIAKPNGSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERLGLVATIKDRANELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGATKKEIGRAKDYIVKTLGLEPGQSVDLGTIHAGDFMRRFCSNLAMSNHAVKAAQEAVQKSEEFDI 242
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_DROME (Transcription initiation factor IIB OS=Drosophila melanogaster GN=TfIIB PE=1 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 2.371e-49 Identity = 116/238 (48.74%), Postives = 150/238 (63.03%), Query Frame = 1 Query: 196 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEVDI 897 C H E ++ D+ AGD +CSECGLV+ ID SEWRTF+NE DP RVGGP NPLL+ G LST+I P S F + ++QNR S+ DR LI AFK I++M+DR+ L TI DRAN ++K+V D K+ +GR+ DA +ACLYIACRQE PRT KEIC+V+ +KKEIGR + +K LET SV++ I DFM RFC+NL + N + E+DI Sbjct: 14 CYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIG-PGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKTIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTLK--ALET--SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDI 243
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_RAT (Transcription initiation factor IIB OS=Rattus norvegicus GN=Gtf2b PE=2 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 2.621e-48 Identity = 110/216 (50.93%), Postives = 141/216 (65.28%), Query Frame = 1 Query: 196 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNL 831 C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPLL+DG LST+I K GA+ F ++QNR S+ DR ++ AFK I TM+DR+ L I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K LET SV++ I GDFM RFCSNL Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNL 222
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_PONAB (Transcription initiation factor IIB OS=Pongo abelii GN=GTF2B PE=2 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 2.621e-48 Identity = 110/216 (50.93%), Postives = 141/216 (65.28%), Query Frame = 1 Query: 196 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNL 831 C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPLL+DG LST+I K GA+ F ++QNR S+ DR ++ AFK I TM+DR+ L I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K LET SV++ I GDFM RFCSNL Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNL 222
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_MOUSE (Transcription initiation factor IIB OS=Mus musculus GN=Gtf2b PE=1 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 2.621e-48 Identity = 110/216 (50.93%), Postives = 141/216 (65.28%), Query Frame = 1 Query: 196 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNL 831 C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPLL+DG LST+I K GA+ F ++QNR S+ DR ++ AFK I TM+DR+ L I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K LET SV++ I GDFM RFCSNL Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNL 222
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_MACFA (Transcription initiation factor IIB OS=Macaca fascicularis GN=GTF2B PE=2 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 2.621e-48 Identity = 110/216 (50.93%), Postives = 141/216 (65.28%), Query Frame = 1 Query: 196 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNL 831 C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPLL+DG LST+I K GA+ F ++QNR S+ DR ++ AFK I TM+DR+ L I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K LET SV++ I GDFM RFCSNL Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNL 222
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_HUMAN (Transcription initiation factor IIB OS=Homo sapiens GN=GTF2B PE=1 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 2.621e-48 Identity = 110/216 (50.93%), Postives = 141/216 (65.28%), Query Frame = 1 Query: 196 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNL 831 C H + + D+ AGD +C ECGLV+ ID SEWRTF+N+ DP RVG NPLL+DG LST+I K GA+ F ++QNR S+ DR ++ AFK I TM+DR+ L I DR N ++K+V +QKS +GR DA+ +ACLYIACRQE PRT KEIC+V+ +KKEIGR + I+K LET SV++ I GDFM RFCSNL Sbjct: 15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNL 222 The following BLAST results are available for this feature:
BLAST of CV885245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 68
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Sequences
The
following sequences are available for this feature:
EST sequence >CV885245 ID=CV885245; Name=CV885245; organism=Citrus sinensis; type=EST; length=898bpback to top |