CV885245

Overview
NameCV885245
Unique NameCV885245
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B2_ARATH (Transcription initiation factor IIB-2 OS=Arabidopsis thaliana GN=TFIIB2 PE=2 SV=1)

HSP 1 Score: 444.506 bits (1142), Expect = 3.828e-124
Identity = 218/242 (90.08%), Postives = 227/242 (93.80%), Query Frame = 1
Query:  172 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEVDI 897
            M+DAFCSDCK+HTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGL+TVI+KPNG+SG+FLSSSLGRWQNRGSNPDRGLI+AFKTIATM+DRLGLVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQ VEMGTIHAGDFMRRFCSNLGM N            SEE DI
Sbjct:    1 MSDAFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLTTVISKPNGSSGDFLSSSLGRWQNRGSNPDRGLIVAFKTIATMADRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEEFDI 242          
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_SOYBN (Transcription initiation factor IIB OS=Glycine max GN=TFIIB1 PE=2 SV=1)

HSP 1 Score: 426.402 bits (1095), Expect = 1.079e-118
Identity = 214/243 (88.07%), Postives = 219/243 (90.12%), Query Frame = 1
Query:  172 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASG-EFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEVDI 897
            M+DAFCSDCK+ TEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDP RVGGP+NPLL DGGLSTVIAKPNG  G EFLSSSLGRWQNRGSNPDR LI AFKTIATMSDRLGLVATIKDRANEIYK+VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLE G +VEMGTIHAGDFMRRFCSNL MNN            SEE DI
Sbjct:    1 MSDAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVGGPSNPLLTDGGLSTVIAKPNGGGGGEFLSSSLGRWQNRGSNPDRALIQAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLENGNAVEMGTIHAGDFMRRFCSNLCMNNQAVKAAQEAVQKSEEFDI 243          
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_ORYSJ (Transcription initiation factor IIB OS=Oryza sativa subsp. japonica GN=TFIIB PE=1 SV=1)

HSP 1 Score: 420.239 bits (1079), Expect = 7.730e-117
Identity = 204/242 (84.30%), Postives = 218/242 (90.08%), Query Frame = 1
Query:  172 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEVDI 897
            M+D+FC DCKKHTEV FDHSAGDTVC+ECGLVLE+HS+DETSEWRTFANES DNDPVRVGGPTNPLL DGGLSTVIAKPNGA GEFLSSSLGRWQNRGSNPDR LILAF+TIA M+DRLGLVATIKDRANEIYKKVED KS RGRNQDA+LAACLYIACRQED+PRTVKEICSVANGATKKEIGRAKE+IVKQL +E GQS+EMGTIHAGDF+RRFCS LGMNN            SEE+DI
Sbjct:    1 MSDSFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESSDNDPVRVGGPTNPLLTDGGLSTVIAKPNGAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLGLVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEELDI 242          
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B1_ARATH (Transcription initiation factor IIB-1 OS=Arabidopsis thaliana GN=TFIIB1 PE=1 SV=1)

HSP 1 Score: 401.364 bits (1030), Expect = 3.716e-111
Identity = 195/242 (80.58%), Postives = 215/242 (88.84%), Query Frame = 1
Query:  172 MTDAFCSDCKKHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRGSNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEVDI 897
            M+DA+C+DCKK TE+V DHSAGDT+CSECGLVLESHSIDETSEWRTFANES ++DP RVGGPTNPLLAD  L+TVIAKPNG+SG+FLSSSLGRWQNR SN DRGLI AFKTIATMS+RLGLVATIKDRANE+YK++EDQKSSRGRNQDAL AACLYIACRQEDKPRT+KEIC +ANGATKKEIGRAK+YIVK LGLE GQSV++GTIHAGDFMRRFCSNL M+N            SEE DI
Sbjct:    1 MSDAYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVGGPTNPLLADSALTTVIAKPNGSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERLGLVATIKDRANELYKRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGATKKEIGRAKDYIVKTLGLEPGQSVDLGTIHAGDFMRRFCSNLAMSNHAVKAAQEAVQKSEEFDI 242          
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_DROME (Transcription initiation factor IIB OS=Drosophila melanogaster GN=TfIIB PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.371e-49
Identity = 116/238 (48.74%), Postives = 150/238 (63.03%), Query Frame = 1
Query:  196 CKKHTE--VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEVDI 897
            C  H E  ++ D+ AGD +CSECGLV+    ID  SEWRTF+NE    DP RVGGP NPLL+ G LST+I  P   S  F +    ++QNR   S+ DR LI AFK I++M+DR+ L  TI DRAN ++K+V D K+ +GR+ DA  +ACLYIACRQE  PRT KEIC+V+   +KKEIGR  +  +K   LET  SV++  I   DFM RFC+NL + N            + E+DI
Sbjct:   14 CYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRVGGPENPLLSGGDLSTIIG-PGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADRINLPKTIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSK-ISKKEIGRCFKLTLK--ALET--SVDL--ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDI 243          
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_RAT (Transcription initiation factor IIB OS=Rattus norvegicus GN=Gtf2b PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.621e-48
Identity = 110/216 (50.93%), Postives = 141/216 (65.28%), Query Frame = 1
Query:  196 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNL 831
            C  H + +   D+ AGD +C ECGLV+    ID  SEWRTF+N+    DP RVG   NPLL+DG LST+I K  GA+  F      ++QNR   S+ DR ++ AFK I TM+DR+ L   I DR N ++K+V +QKS +GR  DA+ +ACLYIACRQE  PRT KEIC+V+   +KKEIGR  + I+K   LET  SV++  I  GDFM RFCSNL
Sbjct:   15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNL 222          
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_PONAB (Transcription initiation factor IIB OS=Pongo abelii GN=GTF2B PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.621e-48
Identity = 110/216 (50.93%), Postives = 141/216 (65.28%), Query Frame = 1
Query:  196 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNL 831
            C  H + +   D+ AGD +C ECGLV+    ID  SEWRTF+N+    DP RVG   NPLL+DG LST+I K  GA+  F      ++QNR   S+ DR ++ AFK I TM+DR+ L   I DR N ++K+V +QKS +GR  DA+ +ACLYIACRQE  PRT KEIC+V+   +KKEIGR  + I+K   LET  SV++  I  GDFM RFCSNL
Sbjct:   15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNL 222          
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_MOUSE (Transcription initiation factor IIB OS=Mus musculus GN=Gtf2b PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.621e-48
Identity = 110/216 (50.93%), Postives = 141/216 (65.28%), Query Frame = 1
Query:  196 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNL 831
            C  H + +   D+ AGD +C ECGLV+    ID  SEWRTF+N+    DP RVG   NPLL+DG LST+I K  GA+  F      ++QNR   S+ DR ++ AFK I TM+DR+ L   I DR N ++K+V +QKS +GR  DA+ +ACLYIACRQE  PRT KEIC+V+   +KKEIGR  + I+K   LET  SV++  I  GDFM RFCSNL
Sbjct:   15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNL 222          
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_MACFA (Transcription initiation factor IIB OS=Macaca fascicularis GN=GTF2B PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.621e-48
Identity = 110/216 (50.93%), Postives = 141/216 (65.28%), Query Frame = 1
Query:  196 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNL 831
            C  H + +   D+ AGD +C ECGLV+    ID  SEWRTF+N+    DP RVG   NPLL+DG LST+I K  GA+  F      ++QNR   S+ DR ++ AFK I TM+DR+ L   I DR N ++K+V +QKS +GR  DA+ +ACLYIACRQE  PRT KEIC+V+   +KKEIGR  + I+K   LET  SV++  I  GDFM RFCSNL
Sbjct:   15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNL 222          
BLAST of CV885245 vs. ExPASy Swiss-Prot
Match: TF2B_HUMAN (Transcription initiation factor IIB OS=Homo sapiens GN=GTF2B PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.621e-48
Identity = 110/216 (50.93%), Postives = 141/216 (65.28%), Query Frame = 1
Query:  196 CKKHTEVVF--DHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPTNPLLADGGLSTVIAKPNGASGEFLSSSLGRWQNRG--SNPDRGLILAFKTIATMSDRLGLVATIKDRANEIYKKVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNL 831
            C  H + +   D+ AGD +C ECGLV+    ID  SEWRTF+N+    DP RVG   NPLL+DG LST+I K  GA+  F      ++QNR   S+ DR ++ AFK I TM+DR+ L   I DR N ++K+V +QKS +GR  DA+ +ACLYIACRQE  PRT KEIC+V+   +KKEIGR  + I+K   LET  SV++  I  GDFM RFCSNL
Sbjct:   15 CPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQNPLLSDGDLSTMIGKGTGAAS-FDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSR-ISKKEIGRCFKLILK--ALET--SVDL--ITTGDFMSRFCSNL 222          
The following BLAST results are available for this feature:
BLAST of CV885245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
TF2B2_ARATH3.828e-12490.08Transcription initiation factor IIB-2 OS=Arabidops... [more]
TF2B_SOYBN1.079e-11888.07Transcription initiation factor IIB OS=Glycine max... [more]
TF2B_ORYSJ7.730e-11784.30Transcription initiation factor IIB OS=Oryza sativ... [more]
TF2B1_ARATH3.716e-11180.58Transcription initiation factor IIB-1 OS=Arabidops... [more]
TF2B_DROME2.371e-4948.74Transcription initiation factor IIB OS=Drosophila ... [more]
TF2B_RAT2.621e-4850.93Transcription initiation factor IIB OS=Rattus norv... [more]
TF2B_PONAB2.621e-4850.93Transcription initiation factor IIB OS=Pongo abeli... [more]
TF2B_MOUSE2.621e-4850.93Transcription initiation factor IIB OS=Mus musculu... [more]
TF2B_MACFA2.621e-4850.93Transcription initiation factor IIB OS=Macaca fasc... [more]
TF2B_HUMAN2.621e-4850.93Transcription initiation factor IIB OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013E08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885245 ID=CV885245; Name=CV885245; organism=Citrus sinensis; type=EST; length=898bp
CTCTTTCTTCCTCTCTTCATTTCTTCACCTAAAAAGTTTCGCACAACAAT
TCCACCGGAATCCCAAAGAACAGGGCTATAATATTAAATTAAAATTAAAA
ATTTAAATAATTTTAAAAAATTAAAAGAAGAAACGGAAATACGTAGGGGA
TTAAATTAAATCGAAGGGGAAATGACGGACGCCTTTTGCTCGGACTGCAA
GAAGCACACGGAGGTGGTGTTCGACCACTCGGCGGGGGACACGGTGTGCT
CGGAGTGCGGCCTCGTGTTGGAGTCGCACTCCATCGACGAGACCTCCGAG
TGGCGTACCTTCGCCAACGAATCCGGCGACAACGACCCCGTCCGTGTCGG
CGGCCCCACCAACCCGCTCCTGGCCGACGGCGGCCTCTCCACCGTCATCG
CCAAGCCTAATGGAGCTTCCGGAGAATTCTTGTCGTCGTCGCTCGGACGC
TGGCAGAATCGCGGCTCGAATCCGGATCGCGGCTTGATTTTGGCTTTTAA
AACAATTGCTACCATGTCTGATAGGTTAGGCCTCGTTGCAACCATTAAGG
ATCGGGCAAATGAGATATATAAGAAGGTGGAAGATCAAAAGTCTAGTAGA
GGCAGAAATCAAGACGCATTATTGGCTGCTTGCCTGTACATTGCTTGTCG
ACAAGAAGACAAGCCACGCACTGTTAAGGAAATCTGCTCTGTCGCCAATG
GAGCTACAAAGAAGGAAATTGGCCGAGCAAAAGAATACATTGTGAAACAG
CTGGGTTTGGAGACTGGTCAGTCAGTGGAGATGGGAACTATACATGCTGG
GGACTTTATGAGGCGCTTCTGTTCCAATTTGGGTATGAATAATCAAGCTG
TTAAAGCTGCCCAAGAAGCTGTTCAGAAGTCCGAGGAAGTTGATATAA
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