CV885235

Overview
NameCV885235
Unique NameCV885235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length969
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: TCPH_BOVIN (T-complex protein 1 subunit eta OS=Bos taurus GN=CCT7 PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 8.510e-64
Identity = 120/171 (70.18%), Postives = 142/171 (83.04%), Query Frame = -1
Query:  457 RFYIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 969
            R+  F+GCP  +T TI+LRGGA+QF+EE ERSLHDAIMIVRRA KN +VVAGGGAI+ME+SKYLR  SR I GK Q  I +YAKALE+IPRQLCDNAGFDAT++LNKLR +HA     G  YGVDINT  IAD+F  FVWEPA+V+INA+ AA+EAACLI+SVDET+KNP+
Sbjct:  357 RYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHA---QGGMWYGVDINTEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPR 524          
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: TCPH_MOUSE (T-complex protein 1 subunit eta OS=Mus musculus GN=Cct7 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 2.476e-63
Identity = 119/171 (69.59%), Postives = 141/171 (82.46%), Query Frame = -1
Query:  457 RFYIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 969
            R+  F+GCP  +T TI+LRGGA+QF+EE ERSLHDAIMIVRRA KN +VVAGGGAI+ME+SKYLR  SR I GK Q  I +YAKALE+IPRQLCDNAGFDAT++LNKLR +HA     G  YGVDIN   IAD+F  FVWEPA+V+INA+ AA+EAACLI+SVDET+KNP+
Sbjct:  357 RYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHA---QGGMWYGVDINNENIADNFQAFVWEPAMVRINALTAASEAACLIVSVDETIKNPR 524          
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: TCPH_PONAB (T-complex protein 1 subunit eta OS=Pongo abelii GN=CCT7 PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 7.204e-63
Identity = 118/171 (69.01%), Postives = 140/171 (81.87%), Query Frame = -1
Query:  457 RFYIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 969
            R+  F+GCP  +T T +LRGGA+QF+EE ERSLHDAIMIVRRA KN +VVAGGGAI+ME+SKYLR  SR I GK Q  I +YAKALE+IPRQLCDNAGFDAT++LNKLR +HA     G  YGVDIN   IAD+F  FVWEPA+V+INA+ AA+EAACLI+SVDET+KNP+
Sbjct:  357 RYNFFTGCPKAKTCTFILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHA---QGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPR 524          
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: TCPH_HUMAN (T-complex protein 1 subunit eta OS=Homo sapiens GN=CCT7 PE=1 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 7.204e-63
Identity = 118/171 (69.01%), Postives = 140/171 (81.87%), Query Frame = -1
Query:  457 RFYIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 969
            R+  F+GCP  +T T +LRGGA+QF+EE ERSLHDAIMIVRRA KN +VVAGGGAI+ME+SKYLR  SR I GK Q  I +YAKALE+IPRQLCDNAGFDAT++LNKLR +HA     G  YGVDIN   IAD+F  FVWEPA+V+INA+ AA+EAACLI+SVDET+KNP+
Sbjct:  357 RYNFFTGCPKAKTCTFILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHA---QGGTWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPR 524          
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: TCPH_CHICK (T-complex protein 1 subunit eta OS=Gallus gallus GN=CCT7 PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 9.409e-63
Identity = 118/171 (69.01%), Postives = 140/171 (81.87%), Query Frame = -1
Query:  457 RFYIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 969
            R+  F+GCP  +T TI+LRGGA+QF+EE ERSLHDAIMIVRRA KN +VVAGGGAI+ME+SKYLR  SR I GK Q  I +YAKALE+IPRQLCDNAGFDAT++LNKLR KHA     G  YGVD+N   IAD+F   VWEPA+V+INA+ AA+EAACLI+SVDET+KNP+
Sbjct:  357 RYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRAKHA---QGGMWYGVDVNNEDIADNFEACVWEPAIVRINALTAASEAACLIVSVDETIKNPR 524          
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: TCPH_DICDI (T-complex protein 1 subunit eta OS=Dictyostelium discoideum GN=cct7 PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.719e-56
Identity = 111/169 (65.68%), Postives = 140/169 (82.84%), Query Frame = -1
Query:  463 RFYIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKN 969
            R+ +F+GC   +TATI+LRGG +QFI+EAERSLHD+IMIVRRA K+ +VVAGGGAI+ME+SKYLR  S +I GK Q  IN++AKALEVIPRQ+ DNAGFD+TD+LN+LRQKHA   GE   +GVDI   GI D++ + +WEP++VK+N+I AATEA CLILSVDETV+N
Sbjct:  357 RYNLFTGCTMTQTATIILRGGGEQFIDEAERSLHDSIMIVRRARKHRSVVAGGGAIEMEVSKYLRDYSLSIEGKKQLLINAFAKALEVIPRQIADNAGFDSTDILNQLRQKHA--QGE-KWFGVDIVNEGICDTYESAIWEPSLVKLNSIVAATEATCLILSVDETVQN 522          
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: TCPH_SCHPO (Probable T-complex protein 1 subunit eta OS=Schizosaccharomyces pombe GN=cct7 PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 1.114e-55
Identity = 109/170 (64.12%), Postives = 137/170 (80.59%), Query Frame = -1
Query:  463 RFYIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKN 969
            RF +F GCP  +T T++LRGGADQFI E ERSLHDAIMIV+ A KN+ VVAGGGA +ME+SKYLR  S  I+GK Q FI ++A++LEVIPRQLCDNAGFD+T++LNKLR +HA    +G  + GVD+++ G+A++F  FVWEP+ VK NAI +ATEAA LILSVDET+KN
Sbjct:  362 RFNLFEGCPKAKTCTLILRGGADQFIAEVERSLHDAIMIVKHALKNNLVVAGGGACEMELSKYLRDYSLTISGKQQNFIAAFARSLEVIPRQLCDNAGFDSTNILNKLRMQHA----KGEMWAGVDMDSEGVANNFEKFVWEPSTVKSNAILSATEAATLILSVDETIKN 527          
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: TCPH_TETPY (T-complex protein 1 subunit eta OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 2.101e-54
Identity = 106/172 (61.63%), Postives = 133/172 (77.33%), Query Frame = -1
Query:  457 RFYIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDIN-TGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 969
            R+ +F  CP  ++ATI+LRGGA+QFI EAERSL+DAIMIVRR  K + +V GGGAI++EIS+ LR  SR   GK Q  IN++AKALEVIP+ + DNAG D+  VLNKLRQKHAL + +   +GVDIN   GI ++F NFVWEP +V+ NA +AATEAAC ILS+DETV+NPK
Sbjct:  357 RYNLFQDCPHSKSATIILRGGAEQFIAEAERSLNDAIMIVRRCMKANKIVPGGGAIELEISRLLRLHSRKTEGKVQLVINAFAKALEVIPKTIADNAGHDSIQVLNKLRQKHALESDQSKNFGVDINAVDGIGNNFENFVWEPIIVRKNAFSAATEAACTILSIDETVRNPK 528          
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: TCPH_YEAST (T-complex protein 1 subunit eta OS=Saccharomyces cerevisiae GN=CCT7 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.584e-54
Identity = 108/169 (63.91%), Postives = 131/169 (77.51%), Query Frame = -1
Query:  463 RFYIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKN 969
            R+ +F GCP  +T T++LRGGA+Q I E ERSLHDAIMIV+RA +N  +VAGGGA +ME+SK LR  S+ IAGK Q  IN++AKALEVIPRQLC+NAGFDA ++LNKLR  H+   GE   YGV   T  I D+FA FVWEPA+VKINA+N+ATEA  LILSVDET+ N
Sbjct:  361 RYNLFQGCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEMEVSKCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHS--KGE-KWYGVVFETENIGDNFAKFVWEPALVKINALNSATEATNLILSVDETITN 526          
BLAST of CV885235 vs. ExPASy Swiss-Prot
Match: TCPH_PLAF7 (T-complex protein 1 subunit eta OS=Plasmodium falciparum (isolate 3D7) GN=PFC0350c PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 3.041e-45
Identity = 94/170 (55.29%), Postives = 123/170 (72.35%), Query Frame = -1
Query:  460 RFYIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNP 969
            R+ IF  C   ++ TI+LRGGA QFIEE ERS++DAIMIV R   NS +V G G+I+M++SKYLR  SR+I  K Q  + S+AKALE IPR L  NAG+D+TD+LNKLR+KH+  T +   YGVD   G I +++ N ++E   +K N I +ATEAACLILS+DET+KNP
Sbjct:  359 RYNIFKECLKTKSVTIILRGGAKQFIEEVERSINDAIMIVLRCITNSEIVPGAGSIEMQLSKYLRIYSRSICNKEQIVLFSFAKALESIPRHLSHNAGYDSTDILNKLRKKHSEQTSD-IWYGVDCMEGDIINAYDNCIFEVTKIKRNVIYSATEAACLILSIDETIKNP 527          
The following BLAST results are available for this feature:
BLAST of CV885235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
TCPH_BOVIN8.510e-6470.18T-complex protein 1 subunit eta OS=Bos taurus GN=C... [more]
TCPH_MOUSE2.476e-6369.59T-complex protein 1 subunit eta OS=Mus musculus GN... [more]
TCPH_PONAB7.204e-6369.01T-complex protein 1 subunit eta OS=Pongo abelii GN... [more]
TCPH_HUMAN7.204e-6369.01T-complex protein 1 subunit eta OS=Homo sapiens GN... [more]
TCPH_CHICK9.409e-6369.01T-complex protein 1 subunit eta OS=Gallus gallus G... [more]
TCPH_DICDI1.719e-5665.68T-complex protein 1 subunit eta OS=Dictyostelium d... [more]
TCPH_SCHPO1.114e-5564.12Probable T-complex protein 1 subunit eta OS=Schizo... [more]
TCPH_TETPY2.101e-5461.63T-complex protein 1 subunit eta OS=Tetrahymena pyr... [more]
TCPH_YEAST3.584e-5463.91T-complex protein 1 subunit eta OS=Saccharomyces c... [more]
TCPH_PLAF73.041e-4555.29T-complex protein 1 subunit eta OS=Plasmodium falc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013E01_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885235 ID=CV885235; Name=CV885235; organism=Citrus sinensis; type=EST; length=969bp
GATAAATAAATAGTCAGTGTCAGATATGCCATCAAGGTTCTAAAAACAAA
AGAGGGTTCCATTTTTTTGGCAGCAAGGGCAAGAAGAAACCAAAGGTCAA
AAGAGTAGAAGAAAACCCATTTAACATAATTAAAACCACGGCCATAATTC
CACAATGGGACAAAACTATAGTCTCGTTGGCTCGTTGGCTTCACCAAACA
ACAACAAACGCAAATGGCATAACTGGCTGAGGGTAACCACCAGTCTGTTA
AATTTTCAATTACACTTGGAAACACAACATAGAGAGACTACAAAAGATGA
GGAAAATCTAATCGAATCAGCACCCCCAATTCACCATCAAAAAAGACATT
CAAGACTTGAAATATCGTAAGCTCATCGCCTGCGCATGCCCCTCCCACGA
CCACGCCCTCTGCCGCCCATGGCACTTGCGGCAGCTTCACCTTGTGCACT
TTCAGACTTAGGGTTCTTTACTGTCTCATCCACACTCAAGATAAGGCATG
CTGCCTCAGTAGCAGCATTTATAGCATTGATCTTGACAACTGCTGGCTCC
CAGACAAAGTTAGCAAATGAATCTGCAATTCCACCAGTGTTGATATCCAC
TCCATAAGGGGCACCCTCACCAGTTGGAAGCGCATGTTTCTGTCTTAATT
TATTCAGCACATCAGTAGCATCAAATCCAGCATTGTCACACAACTGGCGT
GGGATAACCTCGAGAGCTTTTGCATAAGAATTGATAAAAAACTGAGACTT
CCCGGCTATTGCGCGGGATTCCTGCCTCAAGTATTTACTTATCTCCATAT
CTATAGCACCACCACCAGCAACGACAGTGGAATTCTTCGTAGCTCTTCTA
ACAATCATAATTGCATCATGTAAACTCCTCTCGGCTTCTTCAATGAACTG
GTCAGCTCCACCACGAAGTACTATAGTAGCTGTCCTCCCTGATGGGCATC
CACTAAAGATATAAAACCT
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