CV885227

Overview
NameCV885227
Unique NameCV885227
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length567
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885227 vs. ExPASy Swiss-Prot
Match: ATL2B_ARATH (RING-H2 finger protein ATL2B OS=Arabidopsis thaliana GN=ATL2B PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.595e-18
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = -3
Query:  269 EQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 421
            E +  CS+CLQD  +GE  RSLPHCHH FHL C+D WL+RHGSCP+CRRD+
Sbjct:  191 ENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPMCRRDI 241          
BLAST of CV885227 vs. ExPASy Swiss-Prot
Match: ATL4M_ARATH (RING-H2 finger protein ATL4M OS=Arabidopsis thaliana GN=ATL4M PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.975e-17
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = -3
Query:  269 CSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 406
            CS+CLQD  +GE  RSLPHCHH FHL C+D WL RHGSCP+CRRD+
Sbjct:  191 CSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLFRHGSCPMCRRDL 236          
BLAST of CV885227 vs. ExPASy Swiss-Prot
Match: ATL1Q_ARATH (RING-H2 finger protein ATL1Q OS=Arabidopsis thaliana GN=ATL1Q PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 8.855e-17
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = -3
Query:  269 QSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 418
            Q + C+ICLQDI  GE+ RSLP C HTFHL CVDKWLIRHGSCP+CR+ V
Sbjct:  172 QVTHCTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIRHGSCPICRQAV 221          
BLAST of CV885227 vs. ExPASy Swiss-Prot
Match: ATL5P_ARATH (RING-H2 finger protein ATL5P OS=Arabidopsis thaliana GN=ATL5P PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.365e-16
Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = -3
Query:  275 CSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRR 406
            CS+CLQD  VGE  RSLPHCHH FHL C+DKWL RH SCP+CRR
Sbjct:  176 CSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCPLCRR 219          
BLAST of CV885227 vs. ExPASy Swiss-Prot
Match: ATL1P_ARATH (RING-H2 finger protein ATL1P OS=Arabidopsis thaliana GN=ATL1P PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.260e-11
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = -3
Query:  269 QSSC-----CSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 418
            Q SC     CSICL +++ G+ AR LP C+H+FH+ C+D W   H +CP+CR  V
Sbjct:  118 QDSCKDGLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTV 172          
The following BLAST results are available for this feature:
BLAST of CV885227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ATL2B_ARATH3.595e-1866.67RING-H2 finger protein ATL2B OS=Arabidopsis thalia... [more]
ATL4M_ARATH3.975e-1771.74RING-H2 finger protein ATL4M OS=Arabidopsis thalia... [more]
ATL1Q_ARATH8.855e-1772.00RING-H2 finger protein ATL1Q OS=Arabidopsis thalia... [more]
ATL5P_ARATH3.365e-1675.00RING-H2 finger protein ATL5P OS=Arabidopsis thalia... [more]
ATL1P_ARATH7.260e-1147.27RING-H2 finger protein ATL1P OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013D09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885227 ID=CV885227; Name=CV885227; organism=Citrus sinensis; type=EST; length=567bp
TTTTTTTTATAAACATACTTGTTTATTTGATCCACTACTAACTATATTAG
ATACAAAAGGTACAAGTTCTCAACCTGCAAAGCTCAACGAAGACTGTCAC
TATGCCACCCTAGTGCATATACGGTAACCATCCTCCATGACATATAGAGA
AATTAACTTTGAAAGACTTGTATGCTCATCAATACAAACACACTATGTAT
ATGTGGACTGGCTGGTTTCACCTCAAATTTTCTTTCTGTAAACTATAATA
CAAACCTACATACGCCTACACATCCCGTCTGCATACAGGGCATGAGCCAT
GTCTGATTAGCCACTTGTCCACACATGCCAAATGAAAAGTGTGGTGACAA
TGAGGCAAGCTCCTTGCAAGTTCCCCAACAATGATATCCTGTAAACATAT
AGAGCAGCAGCTACTCTGCTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCCC
AAAAAAAACCTTTTTCAATAAAAAAAAAAAAAAATGGGTTTTTTGCTTTT
TTAAGGGCTTTAAAAAA
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