CV885206

Overview
NameCV885206
Unique NameCV885206
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885206 vs. ExPASy Swiss-Prot
Match: ILVH_GALSU (Acetolactate synthase small subunit OS=Galdieria sulphuraria GN=ilvH PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 7.267e-43
Identity = 86/164 (52.44%), Postives = 123/164 (75.00%), Query Frame = -2
Query:  372 HTLSMLVNNTPGVLNIVPGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGVDSTYLR 863
            HTLS+LV +  GVL  + G+ +RRG+NI SLAVGPAEK G+S IT V+ G +  I ++ + L+KL+++ ++QDIT++P  EREL+LIK+      R ++L+IA IFRAR VD+S+  I LE+TGD  KI A+++LLE YGICE+ARTG++AL RES +++  LR
Sbjct:    3 HTLSVLVEDESGVLTRISGLFARRGFNIDSLAVGPAEKAGISRITMVIRGDNRIIEQITKHLYKLVNVLKIQDITNIPCVERELMLIKVKTGENKRNEILEIANIFRARVVDLSESFIILEITGDPGKIAAIEKLLEKYGICEIARTGKIALTRESKINTEILR 166          
BLAST of CV885206 vs. ExPASy Swiss-Prot
Match: ILVH_SYNY3 (Acetolactate synthase small subunit OS=Synechocystis sp. (strain PCC 6803) GN=ilvH PE=3 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.761e-42
Identity = 83/164 (50.61%), Postives = 127/164 (77.44%), Query Frame = -2
Query:  372 HTLSMLVNNTPGVLNIVPGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGVDSTYLR 863
            HTLS+LV +  GVL  + G+ +RRG+NI+SLAVG AE+  +S IT VVPG + +I +L + L+KL+++ +VQDIT  P  EREL+L+K++ N   R +V+++A++FRAR VD+S+ T+T+E+ GD  K++A+ ++L  +GI EVARTG++ALVRESGV++ YL+
Sbjct:    3 HTLSVLVEDEAGVLTRIAGLFARRGFNIESLAVGSAEQGDVSRITMVVPGDENTIEQLTKQLYKLVNVIKVQDITETPCVERELMLVKVSANAPNRAEVIELAQVFRARIVDISEDTVTIEVVGDPGKMVAILQMLAKFGIKEVARTGKIALVRESGVNTEYLK 166          
BLAST of CV885206 vs. ExPASy Swiss-Prot
Match: ILVH_CYACA (Acetolactate synthase small subunit OS=Cyanidium caldarium GN=ilvH PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.152e-42
Identity = 81/170 (47.65%), Postives = 130/170 (76.47%), Query Frame = -2
Query:  354 HTLSMLVNNTPGVLNIVPGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGVDSTYLRGYPLPL 863
            +TLS+LV +  GVL  + G+ +RRG+NI+SLAVGPAE++G+S IT VVPG D ++ +L + L+KL+++ +V +IT +P  ERELIL+KI  +T++R ++L I ++FRA+ VD+S++ + LELTGD  K+ A+Q+LL+ +GI E+ARTG++AL R S V++ +L+   + +
Sbjct:    3 YTLSVLVEDEAGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTVEQLTKQLYKLVNILKVDNITEIPCVERELILVKINASTSSRPEILSILQVFRAKVVDLSENLLVLELTGDPGKVAAIQQLLQKFGIIEIARTGKIALTRTSKVNTEFLKSISMEI 172          
BLAST of CV885206 vs. ExPASy Swiss-Prot
Match: ILVH_PORPU (Acetolactate synthase small subunit OS=Porphyra purpurea GN=ilvH PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.801e-41
Identity = 83/164 (50.61%), Postives = 125/164 (76.22%), Query Frame = -2
Query:  372 HTLSMLVNNTPGVLNIVPGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGVDSTYLR 863
            HTLS+LV +  GVL+ + G+ +RRG+NI SLAVGPAE+ G+S IT VV G + +I +L + L+KL+++  VQD+T++P  EREL+LIKI VN+  R + L+I KIFRA  VD+++  I +E+TGD  KI+A+++LL  +GI E+ARTG+++LVR S +++ YL+
Sbjct:    3 HTLSVLVQDEAGVLSRISGLFARRGFNIASLAVGPAEQIGVSRITMVVQGDNRTIEQLTKQLYKLVNILNVQDVTNIPSVERELMLIKIQVNSQNRIEALEIVKIFRANVVDIAEDLIIVEVTGDPGKIVAIEQLLTKFGIIEIARTGKISLVRTSKINTEYLK 166          
BLAST of CV885206 vs. ExPASy Swiss-Prot
Match: ILVH_PORYE (Acetolactate synthase small subunit OS=Porphyra yezoensis GN=ilvH PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.160e-40
Identity = 80/164 (48.78%), Postives = 125/164 (76.22%), Query Frame = -2
Query:  372 HTLSMLVNNTPGVLNIVPGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGVDSTYLR 863
            HTLS+LV +  GVL+ + G+ +RRG+NI SLAVGPAE+ G+S IT VV G + +I +L + L+KL+++  VQD+T++P  EREL+LIKI +N+  R + L+I +IFRA+ VD+++  + +E+TGD  KI+A+++LL  +GI E+ARTG++ LVR S +++ YL+
Sbjct:    3 HTLSVLVQDEAGVLSRISGLFARRGFNIASLAVGPAEQIGVSRITMVVQGDNRTIEQLTKQLYKLVNILNVQDVTNIPSVERELMLIKIQINSQTRTEALEIVRIFRAKIVDIAEDLLIIEVTGDPGKIVAIEQLLTKFGIIEIARTGKILLVRTSKINTEYLK 166          
BLAST of CV885206 vs. ExPASy Swiss-Prot
Match: ILVH_GUITH (Acetolactate synthase small subunit OS=Guillardia theta GN=ilvH PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.821e-40
Identity = 81/163 (49.69%), Postives = 122/163 (74.85%), Query Frame = -2
Query:  375 HTLSMLVNNTPGVLNIVPGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGVDSTYL 863
            HTLS+LV +  GVL  + G+ +RRG+NI+SLAVGP EK G+S IT VVP  + +I +L + L+KL+++ +V+DIT+LP  EREL+LIK+ V+T  R + LDI  IFRA+ VD+S+  + +E+TGD  KI+A++++L  + I E+ RTG+++LVRES V++  L
Sbjct:    3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPTEKLGISRITMVVPSDERTIEQLTKQLYKLVNILKVEDITNLPTVERELMLIKLRVSTFERTEALDIINIFRAKVVDLSEDFLIIEVTGDPGKIVAIEQILSKFTISEIVRTGKISLVRESNVNTRSL 165          
BLAST of CV885206 vs. ExPASy Swiss-Prot
Match: ILVH_AQUAE (Acetolactate synthase small subunit OS=Aquifex aeolicus GN=ilvH PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.167e-30
Identity = 73/162 (45.06%), Postives = 110/162 (67.90%), Query Frame = -2
Query:  390 LRSHTLSMLVNNTPGVLNIVPGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKI-AVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVRESGV 872
            +R H +++ V N  GVL  +  +I+ +GYNI+ L+VG   ++G+S +T  V G D  I ++V+ L +LID  +V D+T +P  EREL LIK+   ++ AR +VL I +IFR + VDVS  T T+E+TGD +KI A+  LL+P+GI E+ARTG+VA+ RE  +
Sbjct:   25 VRKHIITVKVRNEMGVLARIATLIAGKGYNIEGLSVGETHEKGISRMTIEVIGDDIVIEQVVKQLRRLIDTLKVSDLTDVPHVERELALIKVYTPSSRARDEVLRITEIFRGKVVDVSPDTYTIEVTGDEDKINAMIELLKPFGIKEMARTGKVAMRREMSI 186          
BLAST of CV885206 vs. ExPASy Swiss-Prot
Match: ILVH_ARCFU (Probable acetolactate synthase small subunit OS=Archaeoglobus fulgidus GN=ilvH PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.055e-30
Identity = 70/154 (45.45%), Postives = 105/154 (68.18%), Query Frame = -2
Query:  402 HTLSMLVNNTPGVLNIVPGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVR 863
            HT+++LV N PGVL  V G+  RRG+NI+SL VG  E++ LS +T VV G D+ + ++++ L+KLI+  +V +IT     EREL LI++      R +++++  IFRAR VDVS  +  +E+TGD +K+ A   L+  YGI E+ARTG+VA+VR
Sbjct:    3 HTIAVLVENKPGVLARVAGLFRRRGFNIESLTVGTTERDDLSRMTIVVEGDDKVVEQVIKQLNKLIETIKVSEITE-SSVERELCLIRVHAPPEKRGEIVELTNIFRARIVDVSRDSFIIEVTGDEDKVSAFIDLMRQYGIKELARTGKVAMVR 155          
BLAST of CV885206 vs. ExPASy Swiss-Prot
Match: ILVH_MYCLE (Acetolactate synthase small subunit OS=Mycobacterium leprae GN=ilvH PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.573e-29
Identity = 70/158 (44.30%), Postives = 104/158 (65.82%), Query Frame = -2
Query:  402 GLRSHTLSMLVNNTPGVLNIVPGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVR 875
            GL +HTLS+LV +TPGVL  V  + SRRG+NI+SLAVG  E + +S +T VV   +  + ++ + LHKLI++ +V +        REL LIK+      R  V++   +FRAR +DVS  ++T+E TGD +KI AL R+LEP+G+ E+ ++G V+L R
Sbjct:    3 GLPTHTLSVLVEDTPGVLARVAALFSRRGFNIESLAVGATECKTMSRMTIVVSAEETPLEQVTKQLHKLINVIKVVEQEADNSLSRELALIKVRAEAGTRSQVIEAVHLFRARVIDVSLESLTVEATGDCSKIEALLRVLEPFGVREIVQSGVVSLSR 160          
BLAST of CV885206 vs. ExPASy Swiss-Prot
Match: ILVH_MYCTU (Acetolactate synthase small subunit OS=Mycobacterium tuberculosis GN=ilvH PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.277e-27
Identity = 65/156 (41.67%), Postives = 102/156 (65.38%), Query Frame = -2
Query:  402 RSHTLSMLVNNTPGVLNIVPGVISRRGYNIQSLAVGPAEKEGLSCITTVVPGTDESIGKLVQLLHKLIDLHEVQDITHLPFAERELILIKIAVNTAARRDVLDIAKIFRARAVDVSDHTITLELTGDLNKIIALQRLLEPYGICEVARTGRVALVR 869
            ++HTLS+LV + PGVL  V  + SRRG+NI+SLAVG  E +  S +T VV   D  + ++ + L+KLI++ ++ +        REL LIK+  +  +R  V++   +FRA  +DVS  ++T+E TG+  K+ AL R+LEP+GI E+A++G V+L R
Sbjct:    4 KTHTLSVLVEDKPGVLARVAALFSRRGFNIESLAVGATECKDRSRMTIVVSAEDTPLEQITKQLNKLINVIKIVEQDDEHSVSRELALIKVQADAGSRSQVIEAVNLFRANVIDVSPESLTVEATGNRGKLEALLRVLEPFGIREIAQSGMVSLSR 159          
The following BLAST results are available for this feature:
BLAST of CV885206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
ILVH_GALSU7.267e-4352.44Acetolactate synthase small subunit OS=Galdieria s... [more]
ILVH_SYNY32.761e-4250.61Acetolactate synthase small subunit OS=Synechocyst... [more]
ILVH_CYACA6.152e-4247.65Acetolactate synthase small subunit OS=Cyanidium c... [more]
ILVH_PORPU6.801e-4150.61Acetolactate synthase small subunit OS=Porphyra pu... [more]
ILVH_PORYE1.160e-4048.78Acetolactate synthase small subunit OS=Porphyra ye... [more]
ILVH_GUITH9.821e-4049.69Acetolactate synthase small subunit OS=Guillardia ... [more]
ILVH_AQUAE3.167e-3045.06Acetolactate synthase small subunit OS=Aquifex aeo... [more]
ILVH_ARCFU7.055e-3045.45Probable acetolactate synthase small subunit OS=Ar... [more]
ILVH_MYCLE4.573e-2944.30Acetolactate synthase small subunit OS=Mycobacteri... [more]
ILVH_MYCTU3.277e-2741.67Acetolactate synthase small subunit OS=Mycobacteri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013C07_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885206 ID=CV885206; Name=CV885206; organism=Citrus sinensis; type=EST; length=891bp
GAATAGTAATAGAACTAATTTATCAGTAATTAAAAATTATATATGATACA
TAATTACACATGTTCCTAAGGATGAAAATATGATAATTCTACTAATATTA
TGGTCTTTTTTTCTCTAGGAAATAGATGCAAACTGTCTTAAATTTCATCT
AGCACAATGACAACCTCTATCTGAATTCTGAACTTCCAAACATTGATCTG
CTCCTTACGAAACTTAGAGTCAAATGGAAAAATTAAATTAATAGTCTTTC
CTTCTAGATATAGGTGTTAACCAACTGTTAAGAATAGTCCAAGGAAAACA
AATCCTTCTTAAGATAGTTTGGCAAGGGAAGCAGCAAAATCTCCAGTTGT
TTATAAAGGTAGCGGATATCCGCGTAGATATGTGGAATCCACACCCGACT
CTCGCACCAATGCAACTCTCCCAGTCCGAGCCACCTCACAAATTCCATAG
GGCTCTAATAACCGCTGCAATGCAATAATTTTGTTTAAATCGCCTGTAAG
CTCAAGAGTAATTGTATGATCAGACACGTCAACTGCTCTGGCCCGGAATA
TTTTGGCAATGTCAAGGACATCCCTCCTAGCAGCAGTATTTACAGCAATT
TTTATTAATATCAGCTCTCGCTCGGCAAATGGCAAGTGAGTTATATCTTG
AACCTCGTGGAGATCTATTAGCTTGTGCAATAGCTGAACCAACTTGCCAA
TTGACTCATCAGTTCCAGGAACAACAGTTGTGATGCAAGAAAGACCCTCC
TTTTCAGCAGGCCCCACAGCAAGACTCTGAATGTTGTAACCTCTTCGTGA
TATGACCCCCGGTACAATGTTGAGAACACCGGGAGTGTTATTCACGAGCA
TAGATAAAGTGTGTGACCGGAGGCCACTTGGATCTTCATCA
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