CV885175
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1) HSP 1 Score: 249.595 bits (636), Expect = 1.689e-65 Identity = 129/234 (55.13%), Postives = 167/234 (71.37%), Query Frame = -3 Query: 185 YCDVVTTTTHKSLRVPRGGMIFFKKD---------PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 859 Y DVVTTTTHKSLR PRG MIFF+K VL + E IN AVFPGLQGGPHNHTI GLAV LK A + E+K YQ +V+SN A L+E GY+LVSGG+DNHLVLV+L+P GIDG+RVEK+L+ +I NKN+VPGD SA+VPGGIR+G+PA+T+RGF E++F +A++ + V I L+ K QG+KL+DF++ + S + ++ + +A LR VE QFP G Sbjct: 276 YADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVL-YDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTSEYKAYQEQVLSNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSS-TIQSEIAKLRHEVEEFAKQFPTIG 507
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3) HSP 1 Score: 244.202 bits (622), Expect = 7.094e-64 Identity = 127/237 (53.59%), Postives = 166/237 (70.04%), Query Frame = -3 Query: 182 KYCDVVTTTTHKSLRVPRGGMIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLV-QGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 862 ++C VV+TTTHK+LR R GMIF++K DP G E LES IN+AVFPGLQGGPHNH I G+AV LK A +PEF+ YQ +VV+NCRALA L+ LGY++V+GGSDNHL+LVDLR G DG R EK+L+ I NKN+ PGDKSAL P G+R+G+PA+T+RG E++F +A FIH G+E+TL+ + V + L++FM + VA LR VE+ T FP+PG+ Sbjct: 246 EHCHVVSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQDAVGVKATLKEFMEKLAGAE-EHHRAVAALRAEVESFATLFPLPGL 481
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1) HSP 1 Score: 243.817 bits (621), Expect = 9.265e-64 Identity = 126/233 (54.08%), Postives = 164/233 (70.39%), Query Frame = -3 Query: 185 YCDVVTTTTHKSLRVPRGGMIFFKKD--------PVLGVELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 859 Y DVVTTTTHKSLR PRG MIF++K + + E IN AVFPGLQGGPHNHTI GLAV LK A +PE++ YQ +V+SN A L E GY+LVSGG+DNHLVLV+++ GIDG+RVEK+L+ +I NKN+VPGD SA+VPGGIR+G+PA+T+RGF E++FV +ADF V+I ++ K QG+KL+DF+ + S + + + +A LR VE QFP G Sbjct: 277 YADVVTTTTHKSLRGPRGAMIFYRKGVKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVLSNSSKFAQALGEKGYELVSGGTDNHLVLVNMKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFVATLES-SAPIKSEIAKLRHDVEEYAKQFPTIG 508
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3) HSP 1 Score: 243.432 bits (620), Expect = 1.210e-63 Identity = 126/237 (53.16%), Postives = 165/237 (69.62%), Query Frame = -3 Query: 182 KYCDVVTTTTHKSLRVPRGGMIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKKLV-QGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 862 ++C VV+TTTHK+LR R GMIF++K DP G E LES IN+AVFPGLQGGPHNH I G+AV LK A +PEF+ YQ +VV+NCRALA L+ LGY++V+GGSDNHL+LVDLR G DG R EK+L+ I NKN+ PGDKSAL P G+R+G+PA+T+RG E++F +A FIH G+E+TL+ + V + L++FM + V LR VE+ T FP+PG+ Sbjct: 246 EHCHVVSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGKETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFRKVAHFIHRGIELTLQIQDAVGVKATLKEFMEKLAGAE-EHQRAVTALRAEVESFATLFPLPGL 481
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2) HSP 1 Score: 243.432 bits (620), Expect = 1.210e-63 Identity = 129/236 (54.66%), Postives = 166/236 (70.34%), Query Frame = -3 Query: 185 KYCDVVTTTTHKSLRVPRGGMIFFKKDP----VLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKK--LVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 862 +Y DVVTTTTHKSLR PRG +IF++K GV+ LE IN+AVFPGLQGGPHNHTI G+AV L+ S +F Y +V+ N + LA R+ + GY L +GG+DNHL+LVDLRP+G++GAR E +LD+A+I NKN+ PGD SAL PGGIR+G+PA+T+RGF E++F + DFIHEGV+I AKK G L+DF +F T N +VADL RVE +T+F IPG Sbjct: 272 EYSDVVTTTTHKSLRGPRGALIFYRKGVRSTNAKGVDTLYDLEEKINSAVFPGLQGGPHNHTIAGIAVALRQCLSEDFVQYGEQVLKNAKTLAERMKKHGYALATGGTDNHLLLVDLRPIGVEGARAEHVLDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFQEQDFEKVGDFIHEGVQI---AKKYNAEAGKTLKDFKSF-TETNEPFKKDVADLAKRVEEFSTKFEIPG 503
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1) HSP 1 Score: 243.047 bits (619), Expect = 1.580e-63 Identity = 126/237 (53.16%), Postives = 166/237 (70.04%), Query Frame = -3 Query: 182 KYCDVVTTTTHKSLRVPRGGMIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKK-LVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 862 ++C VVTTTTHK+LR R GMIF++K DP G E LES IN+AVFPGLQGGPHNH I G+AV LK A + EFKVYQ++VV+NCRAL+ L ELGYK+V+GGSDNHL+LVDLR G DG R EK+L+ I NKN+ PGD+SAL P G+R+G+PA+T+RG EK+F +A FIH G+E+TL+ + + L++F + + V LR +VE+ + FP+PG+ Sbjct: 246 EHCHVVTTTTHKTLRGCRAGMIFYRKGVQSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKY--QGAVQALREKVESFASLFPLPGL 480
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3) HSP 1 Score: 243.047 bits (619), Expect = 1.580e-63 Identity = 131/236 (55.51%), Postives = 164/236 (69.49%), Query Frame = -3 Query: 185 KYCDVVTTTTHKSLRVPRGGMIFFKKDP----VLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKK--LVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPG 862 +Y DVVTTTTHKSLR PRG MIF++K GVE LE IN+AVFPGLQGGPHNHTI G+AV LK S +F Y +++ N + LA RL + GY L +GG+DNHL+LVDLRP+G++GAR E ILD+A+I NKN+ PGD SAL PGGIR+G+PA+T+RGF E++F + DFIHEGV+I AKK G L+DF F T+ N VA+L RVE + +F IPG Sbjct: 276 EYSDVVTTTTHKSLRGPRGAMIFYRKGVRSVNAKGVETLYDLEEKINSAVFPGLQGGPHNHTIAGIAVALKQCLSEDFVQYGEQILKNAKTLAERLKKHGYSLATGGTDNHLLLVDLRPIGVEGARAEHILDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFKEQDFEKVGDFIHEGVQI---AKKYNAEAGKTLKDFKAF-TATNEQFKQEVAELAKRVEEFSGKFEIPG 507
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1) HSP 1 Score: 242.276 bits (617), Expect = 2.696e-63 Identity = 126/237 (53.16%), Postives = 165/237 (69.62%), Query Frame = -3 Query: 182 KYCDVVTTTTHKSLRVPRGGMIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKK-LVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 862 ++C VVTTTTHK+LR R GMIF++K DP G E LES IN+AVFPGLQGGPHNH I G+AV LK A + EFKVYQ++VV+NCRAL+ L ELGYK+V+GGSDNHL+LVDLR G DG R EK+L+ I NKN+ PGD+SAL P G+R+G+PA+T+RG EK+F +A FIH G+E+TL+ + + L++F + + V LR VE+ + FP+PG+ Sbjct: 246 EHCHVVTTTTHKTLRGCRAGMIFYRKGVKSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQAA--VQALREEVESFASLFPLPGL 480
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2) HSP 1 Score: 241.891 bits (616), Expect = 3.521e-63 Identity = 126/237 (53.16%), Postives = 164/237 (69.20%), Query Frame = -3 Query: 182 KYCDVVTTTTHKSLRVPRGGMIFFKK-----DPVLGVE----LESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAK-KLVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 862 ++C VVTTTTHK+LR R GMIF+++ DP G E LES IN+AVFPGLQGGPHNH I G+AV LK A +PEFK YQ +VV+NCRAL++ LVELGYK+V+GGSDNHL+LVDLR G DG R EK+L+ I NKN+ PGDKSAL P G+R+G+PA+T+RG EK+F +A FIH G+E+T++ + + L++F + V LR VE+ FP+PG+ Sbjct: 246 EHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDE-KHQRAVRALRQEVESFAALFPLPGL 481
BLAST of CV885175 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2) HSP 1 Score: 240.736 bits (613), Expect = 7.844e-63 Identity = 123/237 (51.90%), Postives = 165/237 (69.62%), Query Frame = -3 Query: 182 KYCDVVTTTTHKSLRVPRGGMIFFKK-----DPVLG----VELESAINNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKVYQNKVVSNCRALASRLVELGYKLVSGGSDNHLVLVDLRPMGIDGARVEKILDMAYITLNKNSVPGDKSALVPGGIRIGSPAMTTRGFSEKEFVAIADFIHEGVEITLEAKK-LVQGSKLQDFMNFVTSPNFSLMNNVADLRGRVEALTTQFPIPGV 862 ++C VVTTTTHK+LR R GMIF++K DP G ELES IN+AVFPGLQGGPHNH I G+AV LK A + EFK+YQ +V++NCRAL+ L ELGYK+V+GGSDNHL+L+DLR G DG R EK+L+ I NKN+ PGDKSAL P G+R+G+PA+T+RG E++F +A FIH G+E+TL+ + + + L++F + + + VA LR VE + F +PG+ Sbjct: 240 EHCHVVTTTTHKTLRGCRAGMIFYRKGVRSVDPKTGKETYYELESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTTEFKIYQLQVLANCRALSDALTELGYKIVTGGSDNHLILMDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQSHMATKATLKEFKEKLAGDE-KIQSAVATLREEVENFASNFSLPGL 475 The following BLAST results are available for this feature:
BLAST of CV885175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CV885175 ID=CV885175; Name=CV885175; organism=Citrus sinensis; type=EST; length=864bpback to top |