CV885149
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV885149 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 9.432e-30 Identity = 67/107 (62.62%), Postives = 74/107 (69.16%), Query Frame = 2 Query: 2 NGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 322 NGVPLRRVNQ+YVI TSTKVDISGVNV+KFDDKYF K+ DDQK+VD L+KAIE VP+LKAYLGARFSL+AGMKPHELVF Sbjct: 128 NGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234
BLAST of CV885149 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.232e-29 Identity = 68/107 (63.55%), Postives = 73/107 (68.22%), Query Frame = 2 Query: 2 NGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 322 NGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K DDQK+VDA LIKAIEAVP+LK YLGARFSL+ GMKPHELVF Sbjct: 127 NGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233
BLAST of CV885149 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.232e-29 Identity = 68/107 (63.55%), Postives = 73/107 (68.22%), Query Frame = 2 Query: 2 NGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 322 NGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K DDQK+VDA LIKAIEAVP+LK YLGARFSL+ GMKPHELVF Sbjct: 127 NGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233
BLAST of CV885149 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 1.779e-28 Identity = 65/107 (60.75%), Postives = 72/107 (67.29%), Query Frame = 2 Query: 2 NGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 322 NGVPLRRVNQ+YVIGTSTK+DISGVN +KFDDKYF K +DQK+VDA LIK+IEAVP+LK YLGARFSL GMKPHELVF Sbjct: 127 NGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233
BLAST of CV885149 vs. ExPASy Swiss-Prot
Match: RL6A_YEAST (60S ribosomal protein L6-A OS=Saccharomyces cerevisiae GN=RPL6A PE=1 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 3.480e-16 Identity = 51/107 (47.66%), Postives = 58/107 (54.21%), Query Frame = 2 Query: 2 NGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 322 NGVPLRRVN YVI TSTKV + GVNV+KF+ +YFAKE +DQK VD LI I+ P LK YL A FSL+ G KPH L F Sbjct: 72 NGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176
BLAST of CV885149 vs. ExPASy Swiss-Prot
Match: RL6B_YEAST (60S ribosomal protein L6-B OS=Saccharomyces cerevisiae GN=RPL6B PE=1 SV=4) HSP 1 Score: 83.5741 bits (205), Expect = 7.752e-16 Identity = 50/107 (46.73%), Postives = 58/107 (54.21%), Query Frame = 2 Query: 2 NGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 322 NGVPLRRVN YVI TSTKV + GVNV+KF+ +YFAKE +DQK VD L+ I+ P LK YL A FSL+ G KPH L F Sbjct: 72 NGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQTKEIKTERVEDQKVVDKALLAEIKKTPLLKQYLSASFSLKNGDKPHLLKF 176
BLAST of CV885149 vs. ExPASy Swiss-Prot
Match: RL6_SCHPO (60S ribosomal protein L6 OS=Schizosaccharomyces pombe GN=rpl6 PE=1 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 1.119e-14 Identity = 46/108 (42.59%), Postives = 61/108 (56.48%), Query Frame = 2 Query: 2 NGVPLRRVNQSYVIGTST-KVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 322 NGVP+RRVN YVI TS K+D+SGV+V+KF YFAK+ DQK+VDA L+ AI+A+P++K YL A F+L G +PH + F Sbjct: 89 NGVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKAYFAKQ-KRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKLLPAIKAIPNMKEYLAASFALSNGDRPHLMKF 195
BLAST of CV885149 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5) HSP 1 Score: 72.4034 bits (176), Expect = 1.787e-12 Identity = 45/108 (41.67%), Postives = 58/108 (53.70%), Query Frame = 2 Query: 2 NGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 322 N VPLRR +Q +VI TSTKVDIS V + K D YF K+ D QK+VD+ ++ I+AVP L+ YL ++FSL GM PH+LVF Sbjct: 192 NRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQEGEIFDTEKEKYEITEQRKAD-QKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 298
BLAST of CV885149 vs. ExPASy Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3) HSP 1 Score: 72.0182 bits (175), Expect = 2.334e-12 Identity = 45/108 (41.67%), Postives = 57/108 (52.78%), Query Frame = 2 Query: 2 NGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 322 N VPLRR +Q +VI TSTKVDIS V + K D YF K+ D QK+VD ++ I+AVP L+ YL ++FSL GM PH+LVF Sbjct: 190 NRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKKQLRKPRHQEGEIFDTEKEKYEITEQRKAD-QKAVDLQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 296
BLAST of CV885149 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3) HSP 1 Score: 70.8626 bits (172), Expect = 5.200e-12 Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 2 Query: 2 NGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 322 N VPLRR +Q +VI TSTK+DISGV + + D YF K+ D QK+VD+ +++ I+AVP L+ YL + F+L G+ PH+LVF Sbjct: 178 NRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKVD-QKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 284 The following BLAST results are available for this feature:
BLAST of CV885149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >CV885149 ID=CV885149; Name=CV885149; organism=Citrus sinensis; type=EST; length=577bpback to top |