FC871877

Overview
NameFC871877
Unique NameFC871877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9666 contig Csv1_Contig9666:1409..2046. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC871877 vs. ExPASy Swiss-Prot
Match: ZFNL_PEA (Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.856e-28
Identity = 65/87 (74.71%), Postives = 70/87 (80.46%), Query Frame = 2 
Query:    2 FYSRYGICKFGPSCKFDHPMGIFTYNLSASSSADAPVRRFLGSSSATGALNLSSEGLVEAGSG--RRLSLPETRQMSSGDDEIDTEG 256
            FYSRYGICKFGPSCKFDHPMGIFTYN+ AS  AD P RR LGSSS T AL+LSSEGLVE+G+   RRLSL ETR +  GDD ID EG
Sbjct:  332 FYSRYGICKFGPSCKFDHPMGIFTYNV-ASPLADTPGRRLLGSSSGTAALSLSSEGLVESGTAKPRRLSLSETRPIPPGDDNIDDEG 417
[Close]
BLAST of FC871877 vs. ExPASy Swiss-Prot
Match: C3H63_ORYSJ (Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica GN=Os11g0472000 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.748e-12
Identity = 35/84 (41.67%), Postives = 50/84 (59.52%), Query Frame = 2 
Query:    2 FYSRYGICKFGPSCKFDHPMGIFTYNLSASSSADAPVRRFLGSSSATGALNLSSEGLVEAGSGRRLSLPETRQMSSGDDEIDTE 253
            FYSRYGICKFGP+CKFDHPMG   Y L+ S + D   RR L    A   ++  +     +G  RR++  +++Q+ SG+   + E
Sbjct:  363 FYSRYGICKFGPNCKFDHPMGTVMYGLATSPTGDVSARRMLAPVPAHSEVSPDN----VSGRSRRITHSDSQQIPSGERGTERE 442
The following BLAST results are available for this feature:
BLAST of FC871877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ZFNL_PEA2.856e-2874.71Zinc finger CCCH domain-containing protein ZFN-lik... [more]
C3H63_ORYSJ3.748e-1241.67Zinc finger CCCH domain-containing protein 63 OS=O... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK3CC05FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3CC05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871877 ID=FC871877; Name=FC871877; organism=Citrus sinensis; type=EST; length=638bp
CTTCTACTCTCGTTATGGCATATGCAAGTTTGGTCCAAGTTGCAAGTTTG
ATCACCCAATGGGAATTTTCACATACAATCTCTCTGCATCATCTTCAGCT
GATGCCCCGGTCCGACGATTTTTGGGGTCATCATCTGCAACTGGTGCATT
AAATTTATCGTCGGAAGGCCTAGTTGAAGCAGGCTCAGGCAGGCGACTTT
CGTTACCTGAGACTAGACAGATGTCTTCCGGTGATGATGAGATTGACACA
GAGGGATAAGCAGTGTCTCAAGTGATGCGCTGGTTACTTTTCCACGATAT
TTGATTGGACAGTGAAGTAATCTGTAAATTCATTTCCGTTGCTGGAGATG
TACAGATTCATGTCAAGTTCATTATGTTCATCTGAAAATACAATTCAGTT
GACAGTCTTGGCTCTGAATTTCATGTTGCTGCTTTGTATAAAAATCTGAA
AATATTGTCACAATTGGTAGAACCCAATGTGAACATTTCATCTTTCCTGA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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