CV885100

Overview
NameCV885100
Unique NameCV885100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885100 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 323.939 bits (829), Expect = 7.086e-88
Identity = 172/252 (68.25%), Postives = 193/252 (76.59%), Query Frame = 3
Query:    9 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQRCC-FNPQDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKAIQDLW----XXXXXXXXXXXFSVHPSHDSPMNCDPEPALQIGYLN--YLPSEGSSVPK-NTVGETNFIQGWVL 740
            MGRGRVE+KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS GI  T+ERY RC   +  +N  E  TQSW QE TKLK+KYESL RT R+LLGEDLG + VKELQ LE+QLE AL   RQRKTQ+M+E++EDLRKKERQLGDINKQL+IK ETEG +FK  QDLW               F V PSH + ++C+ EP LQIG+    Y+  EGSSV K N  GETNF+QGWVL
Sbjct:    1 MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGIESTIERYNRCYNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMGVKELQALERQLEAALTATRQRKTQVMMEEMEDLRKKERQLGDINKQLKIKFETEGHAFKTFQDLWANSAASVAGDPNNSEFPVEPSHPNVLDCNTEPFLQIGFQQHYYVQGEGSSVSKSNVAGETNFVQGWVL 252          
BLAST of CV885100 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 3.888e-86
Identity = 171/252 (67.86%), Postives = 200/252 (79.37%), Query Frame = 3
Query:    9 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQRCCFNPQD-NSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEG--QSFKAIQDL-WXXXXXXXXXXXFSVHPSHDSPMNCDPEPALQIGYLN-YLPSEGSSVPKNTV---GETNFIQGWVL 740
            MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGI KTLERYQ CC+N QD N+   ETQSWY E +KLKAK+E+LQRTQRHLLGEDLGPLSVKELQ LEKQLE AL+ ARQRKTQ+M+EQVE+LR+KERQLG+IN+QL+ KLE EG   +++A+Q   W           +   P H + M  D EP LQIGY + ++P+E +++ ++T     E NF+ GWVL
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGITKTLERYQHCCYNAQDSNNALSETQSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLEVEGSTSNYRAMQQASWAQGAVVENGAAYVQPPPHSAAM--DSEPTLQIGYPHQFVPAEANTIQRSTAPAGAENNFMLGWVL 250          
BLAST of CV885100 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 299.671 bits (766), Expect = 1.431e-80
Identity = 162/253 (64.03%), Postives = 186/253 (73.52%), Query Frame = 3
Query:    9 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQRCCFNPQDNS---IERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSF---KAIQDLWXXXXXXXXXXXFSVHPSHDSPMNCDPEPALQIGYLNYLPSEGSSVPKNTVG---ETNFIQGWVL 740
            MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLE+Y  CC+N Q ++      E QSWYQE ++LK K E LQR+QRH+LGEDLGPLS+KELQ LEKQLE +L+ ARQRKTQIM+EQV+DLR+KERQLG++NKQL+ KLE E  S     AIQD W            +  P    P + D EP LQIGY  ++  E ++   N  G     NF+ GW L
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLEAEADSSNCRSAIQDSWVHGTVVSGGRVLNAQP----PPDIDCEPTLQIGYYQFVRPEAANPRSNGGGGDQNNNFVMGWPL 249          
BLAST of CV885100 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 6.896e-67
Identity = 142/246 (57.72%), Postives = 178/246 (72.36%), Query Frame = 3
Query:    9 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLERYQRCCFNPQDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKAIQD-LWXXXXXXXXXXXFSVHPSHDSPM-NCDPEPALQIGY-LNYLPSEGSSVPKNTV---GETNFIQ 728
            MGRG+VE+KRIENKI RQVTFSKR++GLLKKAYELSVLCDAEV+LIIFS+ GKLYEF + G+ +T+ERY RC  N  DN    +TQ   QE TKLK KYESL RT R+L+GEDL  +S+KELQ LE+QLEGAL+  R++KTQ+M+EQ+E+LR+KER+LGDIN +L  KLETE   FK  QD L            FS+  +H + + +C+    LQIG+  +Y   EGSSV K+      ETNF+Q
Sbjct:    1 MGRGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNVGVGRTIERYYRCKDNLLDNDTLEDTQGLRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIKELQTLERQLEGALSATRKQKTQVMMEQMEELRRKERELGDINNKL--KLETEDHDFKGFQDLLLNPVLTAGCSTDFSLQSTHQNYISDCNLGYFLQIGFQQHYEQGEGSSVTKSNARSDAETNFVQ 244          
BLAST of CV885100 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 1.441e-56
Identity = 131/250 (52.40%), Postives = 168/250 (67.20%), Query Frame = 3
Query:    9 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GSAGINKTLERYQRCCFN-PQDNSIERETQ--SWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKAIQDLWXXXXXXXXXXXFSVHPSHDS---PMNCDPEPALQIGYLNYLPSEGSSVPKNTVGETNFIQGWV 737
            MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEF  S+ + KTLERYQ+C +  P+ N   RE    S  QE  KLKA+YE+LQR+QR+LLGEDLGPL+ KEL++LE+QL+ +L   R  +TQ+M++Q++DL++KE  L + N+ L+ +L  EG +       W            +     D    P+ C  EP LQIGY N   + G + P       N++ GW+
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPETNISTREALEISSQQEYLKLKARYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQRL-MEGSTLNL---QWQQNAQDVGYGRQATQTQGDGFFHPLEC--EPTLQIGYQNDPITVGGAGP----SVNNYMAGWL 240          
BLAST of CV885100 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.458e-56
Identity = 131/246 (53.25%), Postives = 160/246 (65.04%), Query Frame = 3
Query:    9 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAG-INKTLERYQRCCFNPQDNS-IERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKAIQDLWXXXXXXXXXXXFSVHPSHDSPMNCDPEPALQIGYLNYLPSEGSSVPKNTVGETNFIQGWVL 740
            MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALI+FS+RGKLYEF S   +NKTLERYQRC +   + S   +ET+S YQE  KLKAK + LQR+ R+LLGEDLG LS KEL+ LE QL+ +L   R  KTQ M++Q+ DL+KKE  L + N+ L+ KLE    SF+   D+                     P+ C+    LQIGY N    +  +   +      F QGW+L
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTLERYQRCSYGSLETSQPSKETESSYQEYLKLKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTKLEESCASFRPNWDVRQPGDGFF----------EPLPLPCNNN--LQIGY-NEATQDQMNATTSAQNVHGFAQGWML 233          
BLAST of CV885100 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.152e-56
Identity = 129/253 (50.99%), Postives = 165/253 (65.22%), Query Frame = 3
Query:    9 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GSAGINKTLERYQRCCFNPQDNSI-ERET----QSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKAI----QDLWXXXXXXXXXXXFSVHPSHDSPMNCDPEPALQIGYLNYLPSEGSSVPKNTVGETNFIQGWV 737
            MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEF  S+ + +TLERYQ+C + P + ++  RE      S  QE  KLK +Y++LQRTQR+LLGEDLGPLS KEL+ LE+QL+ +L   R  +TQ M++Q+ DL+ KER L + NK LR++L    Q    +    +D              + H +   P+ C  EP LQ+GY         + P     E N++ GW+
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMIRTLERYQKCNYGPPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETNKTLRLRLADGYQMPLQLNPNQEDHHVDYGRHDQQQQQNSHHAFFQPLEC--EPILQMGYQGQQDHGMEAGP----SENNYMLGWL 247          
BLAST of CV885100 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.593e-55
Identity = 127/250 (50.80%), Postives = 164/250 (65.60%), Query Frame = 3
Query:    9 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GSAGINKTLERYQRCCFN--PQDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETE-GQSFKAIQDLWXXXXXXXXXXXFSVHPSHDSPMNCDPEPALQIGYLNYLPSEGSSVPKNTVGE--TNFIQGWVL 740
            MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEV+LI+FS+RGKLYEF  ++ + KTLERYQ+C +     +N   +E ++ Y+E  KLK +YE+LQR QR+LLGEDLGPL+ KEL+ LE+QL+G+L   R  KTQ M++Q+ DL+ KE  L D N+ L +KLE   G     I   W                S     + + +P LQIGY + + SE  +V      +    +I GW+L
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLEDMIGVRHHHIGGGWEGGDQQNIAYGHPQAHSQGLYQSLECDPTLQIGYSHPVCSEQMAVTVQGQSQQGNGYIPGWML 250          
BLAST of CV885100 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.550e-55
Identity = 130/251 (51.79%), Postives = 161/251 (64.14%), Query Frame = 3
Query:    9 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GSAGINKTLERYQRCCFN-PQDNSIERET----QSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKAIQDLWXXXXXXXXXXXFSVHPSHD--SPMNCDPEPALQIGYLNYLPSEGSSVPKNTVGETNFIQGWV 737
            MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEF  S+ + +TLERYQ+C +  P+ N   RE      S  QE  KLK +Y++LQRTQR+LLGEDLGPLS KEL++LE+QL+ +L   R  +TQ M++Q+ DL+ KER L + NK LR++L    Q    +                    S     P+ C  EP LQIGY       G+    N     N++ GW+
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGYQMPLQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLEC--EPILQIGYQGQQDGMGAGPSVN-----NYMLGWL 244          
BLAST of CV885100 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 6.055e-55
Identity = 125/253 (49.41%), Postives = 165/253 (65.22%), Query Frame = 3
Query:    9 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GSAGINKTLERYQRCCFN--PQDNSIERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLETEGQSFKAIQDLWXXXXXXXXXXXFSVHPSHD----SPMNCDPEPALQIGYLNYLPSEGSSVPKNTVGE--TNFIQGWVL 740
            MGRGRVELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEF  S+ + KTL+RYQ+C +     +N   +E ++ Y+E  KLK +YE+LQR QR+LLGEDLGPL+ KEL+ LE+QL+G+L   R  KTQ M++Q+ DL+ KE+ L + N+ L +KL+                        ++ H +       P+ C+  P LQ+GY N + SE  +       +    +I GW+L
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKLDDMIGVRSHHMGGGGGWEGGEQNVTYAHHQAQSQGLYQPLECN--PTLQMGYDNPVCSEQITATTQAQAQQGNGYIPGWML 251          
The following BLAST results are available for this feature:
BLAST of CV885100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
AGL6_ARATH7.086e-8868.25Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]
MADS6_ORYSJ3.888e-8667.86MADS-box transcription factor 6 OS=Oryza sativa su... [more]
MAD17_ORYSJ1.431e-8064.03MADS-box transcription factor 17 OS=Oryza sativa s... [more]
AGL13_ARATH6.896e-6757.72Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]
AGL9_PETHY1.441e-5652.40Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
CMB1_DIACA2.458e-5653.25MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
AGL9_SINAL7.152e-5650.99Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
SEP2_ARATH1.593e-5550.80Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
SEP3_ARATH3.550e-5551.79Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
SEP1_ARATH6.055e-5549.41Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_012F04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885100 ID=CV885100; Name=CV885100; organism=Citrus sinensis; type=EST; length=867bp
TGAAAATTATGGGGAGAGGAAGAGTGGAGCTGAAGAGGATAGAGAACAAG
ATTAACAGACAGGTCACTTTCTCAAAGAGAAGAAATGGTTTGCTGAAGAA
AGCTTATGAGCTTTCTGTGCTTTGTGATGCTGAAGTTGCTCTTATCATCT
TCTCTAGCCGTGGCAAGCTCTATGAGTTTGGTAGTGCTGGCATAAACAAA
ACCCTTGAGCGATACCAACGTTGCTGCTTCAATCCTCAAGACAACAGCAT
CGAACGTGAAACACAGAGCTGGTACCAGGAGGCAACAAAGTTGAAAGCAA
AATATGAGTCTCTTCAACGCACTCAAAGGCATTTGCTTGGAGAGGATCTT
GGACCGCTGAGTGTAAAGGAGCTGCAGAATCTTGAGAAACAGCTTGAAGG
AGCCCTAGCACTGGCCAGGCAAAGGAAGACACAGATTATGATAGAGCAGG
TGGAAGACCTCCGCAAAAAGGAGCGTCAGCTTGGAGATATCAACAAGCAG
CTCAGGATTAAGCTGGAGACTGAAGGGCAAAGTTTTAAGGCCATTCAAGA
CCTGTGGAATTCTGCTGCTGCAGGTGCTGGAAATAGCAACTTCTCTGTTC
ATCCTTCTCATGACAGTCCCATGAACTGTGACCCGGAACCTGCTCTACAA
ATTGGGTACCTGAATTATCTTCCATCTGAAGGGTCTTCAGTGCCAAAGAA
TACGGTTGGTGAGACCAACTTCATCCAAGGATGGGTCCTTTGAGTAGAGC
ATTGAGATATATGTAATTAAGCATACGTGATGATTATATAATTTTTTCTA
ATGGCTTTTGTACTAACTGGGGTTTGTAATATTTTGCCAAGATACTCTAC
ATACTTGTCGTATACCT
back to top