CV885082

Overview
NameCV885082
Unique NameCV885082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CV885082 vs. ExPASy Swiss-Prot
Match: Y4844_ARATH (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.757e-43
Identity = 88/132 (66.67%), Postives = 105/132 (79.55%), Query Frame = -2 
Query:  396 RKPVFTKVDQLRPGTSGHTLTVKVVSTKMVL---QKGRGDGTQVRQM---RIAECLVGDETGMIIFTARNDQVDLMKEGTTVILRNAKIDMFKGSMRLAVDKWGRVEVAEPANFTVKEDNNLSLIEYELVNV 773
            RKPVF KV+QL+PGT+GHTLTVKV+   +V+   +K R   +  R     RI ECL+GDETG I+FTARNDQVDLMK G TVILRN++IDMFKG+MRL VDKWGR+E    A+FTVKEDNNLSL+EYEL+NV
Sbjct:   18 RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDNNLSLVEYELINV 149
The following BLAST results are available for this feature:
BLAST of CV885082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4844_ARATH5.757e-4366.67Uncharacterized protein At4g28440 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012E05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885082 ID=CV885082; Name=CV885082; organism=Citrus sinensis; type=EST; length=774bp
AGCAGGCCAAAACCACACTTATATATAATAACATACATTTCACGATATTA
ATATTTCAAGTATAATCTAATAGCCAAAGAACAGTTGAGTTCCAAAAATA
AATAGGTCGCAAACAAACCAAAGACAGTTCTAAATGCCAGCTGCTTTCAC
TTATCAACTTTAGAGCCATCACCATCTGTTTGGAGGTCCAATCAAAAGGT
TCTACTGGATCTGCCACAACGGTAGAAAGCATCTTGGGTAGTAATAGCTT
CCAGATTTCTTCTTCCTAAAGGCACCACAGTTTTGGACAGGAGATGCCGC
ATAAACGACAGTACTATGATATGCTGGATTTCTTTTTATTCTTGGGTCAC
ATTGCAGTGAGTAAGTGAACACCGTCCAGAAATTCACTCTTCTACAACAT
TCACAAGCTCATATTCAATCAGAGAGAGGTTGTTATCTTCCTTCACGGTG
AAATTGGCAGGCTCTGCAACTTCAACACGGCCCCACTTGTCCACAGCAAG
TCTCATTGATCCTTTAAACATGTCAATTTTTGCATTGCGCAGAATCACAG
TAGTACCCTCTTTCATCAGGTCCACTTGATCATTTCTAGCAGTAAAGATA
ATCATTCCTGTCTCATCACCAACCAAGCATTCAGCAATTCGCATCTGACG
TACTTGTGTTCCATCACCACGACCCTTCTGCAATACCATCTTCGTACTCA
CGACCTTCACTGTGAGAGTGTGCCCACTAGTACCCGGGCGTAGCTGATCA
ACCTTGGTAAAAACTGGTTTCCTC
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