CV885078

Overview
NameCV885078
Unique NameCV885078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885078 vs. ExPASy Swiss-Prot
Match: CATB_MACFA (Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.311e-57
Identity = 110/250 (44.00%), Postives = 151/250 (60.40%), Query Frame = -1
Query:  167 QCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXXXXXXXXXXXXXG--YPISAWRYFVHHGVVTEE-------CDPYFDSTGCSH------PGCEPAYPTPKCVRKCVKK-NQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSKNLVKEI 868
            QC TI  I DQG CGSCWAFGAVEA+SDR CIH   ++S+ V+                   YP  AW ++   G+V+         C PY     C H      P C     TPKC + C    +  ++  KHY  ++Y +++  +DIMAEIYKNGPVE +F+VY DF  YKSGVY+H+TG++MGGHA++++GWG  ++G  YW++AN WN  WG +G+FKI RG + CGIE +VVAG+P +    ++I
Sbjct:   92 QCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGIMCGDGCNGGYPAGAWNFWTRKGLVSGGLYDSHVGCRPY-SIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI 339          
BLAST of CV885078 vs. ExPASy Swiss-Prot
Match: CATB_HUMAN (Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3)

HSP 1 Score: 223.402 bits (568), Expect = 1.311e-57
Identity = 110/250 (44.00%), Postives = 151/250 (60.40%), Query Frame = -1
Query:  167 QCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXXXXXXXXXXXXXG--YPISAWRYFVHHGVVTEE-------CDPYFDSTGCSH------PGCEPAYPTPKCVRKCVKK-NQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSKNLVKEI 868
            QC TI  I DQG CGSCWAFGAVEA+SDR CIH   ++S+ V+                   YP  AW ++   G+V+         C PY     C H      P C     TPKC + C    +  ++  KHY  ++Y +++  +DIMAEIYKNGPVE +F+VY DF  YKSGVY+H+TG++MGGHA++++GWG  ++G  YW++AN WN  WG +G+FKI RG + CGIE +VVAG+P +    ++I
Sbjct:   92 QCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPY-SIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI 339          
BLAST of CV885078 vs. ExPASy Swiss-Prot
Match: CATB_PONAB (Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.712e-57
Identity = 110/250 (44.00%), Postives = 150/250 (60.00%), Query Frame = -1
Query:  167 QCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXXXXXXXXXXXXXG--YPISAWRYFVHHGVVTEE-------CDPYFDSTGCSH------PGCEPAYPTPKCVRKCVKK-NQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSKNLVKEI 868
            QC TI  I DQG CGSCWAFGAVEA+SDR CIH   ++S+ V+                   YP  AW ++   G+V+         C PY     C H      P C     TPKC + C    +  ++  KHY  ++Y +++   DIMAEIYKNGPVE +F+VY DF  YKSGVY+H+TG++MGGHA++++GWG  ++G  YW++AN WN  WG +G+FKI RG + CGIE +VVAG+P +    ++I
Sbjct:   92 QCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPY-SIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSERDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI 339          
BLAST of CV885078 vs. ExPASy Swiss-Prot
Match: CATB_RAT (Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 1.110e-56
Identity = 110/243 (45.27%), Postives = 147/243 (60.49%), Query Frame = -1
Query:  185 CSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNXXXXXXXXXXXXXXXXGYPISAWRYFVHHGVVTEE-------CDPYFDSTGCSH------PGCEPAYPTPKCVRKC-VKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSK 865
            C TI++I DQG CGSCWAFGAVEA+SDR CIH    +N+ +S                  GYP  AW ++   G+V+         C PY     C H      P C     TPKC + C    +  ++  KHY  ++Y ++   ++IMAEIYKNGPVE +FTV+ DF  YKSGVYKH  GDVMGGHA++++GWG  ++G  YW++AN WN  WG +G+FKI RG N CGIE ++VAG+P ++
Sbjct:   93 CPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPY-TIPPCEHHVNGSRPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGI-ENGVPYWLVANSWNVDWGDNGFFKILRGENHCGIESEIVAGIPRTQ 333          
BLAST of CV885078 vs. ExPASy Swiss-Prot
Match: CATB_PIG (Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.093e-55
Identity = 107/240 (44.58%), Postives = 143/240 (59.58%), Query Frame = -1
Query:  194 CSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNXXXXXXXXXXXXXXXXGYPISAWRYFVHHGVVTEE-------CDPYFDSTGCSH------PGCEPAYPTPKCVRKCVKK-NQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLP 865
            C TI  I DQG CGSCWAFGAVEA+SDR CI     +N+ +S                  G+P  AW ++   G+V+         C PY     C H      P C     TPKC + C       ++  KH+  S+Y I+ + ++IMAEIYKNGPVE +FTVY DF  YKSGVY+H+TGD+MGGHA++++GWG  ++G  YW++ N WN  WG +G+FKI RG + CGIE ++VAG+P
Sbjct:   93 CPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDMLTCCGDECGDGCNGGFPSGAWNFWTKKGLVSGGLYDSHVGCRPY-SIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAEIYKNGPVEGAFTVYSDFLQYKSGVYQHVTGDLMGGHAIRILGWGV-ENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEIVAGIP 330          
BLAST of CV885078 vs. ExPASy Swiss-Prot
Match: CATB_MOUSE (Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 6.090e-55
Identity = 106/241 (43.98%), Postives = 143/241 (59.34%), Query Frame = -1
Query:  194 CSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNXXXXXXXXXXXXXXXXGYPISAWRYFVHHGVVTEECDPYFDSTGC--------------SHPGCEPAYPTPKCVRKC-VKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLP 865
            C TI +I DQG CGSCWAFGAVEA+SDR CIH    +N+ +S                  GYP  AW ++   G+V+     Y    GC              S P C     TP+C + C    +  ++  KH+  ++Y +++  ++IMAEIYKNGPVE +FTV+ DF  YKSGVYKH  GD+MGGHA++++GWG  ++G  YW+ AN WN  WG +G+FKI RG N CGIE ++VAG+P
Sbjct:   93 CPTIGQIRDQGSCGSCWAFGAVEAISDRTCIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWSFWTKKGLVSGGV--YNSHVGCLPYTIPPCEHHVNGSRPPCTGEGDTPRCNKSCEAGYSPSYKEDKHFGYTSYSVSNSVKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDMMGGHAIRILGWGV-ENGVPYWLAANSWNLDWGDNGFFKILRGENHCGIESEIVAGIP 330          
BLAST of CV885078 vs. ExPASy Swiss-Prot
Match: CATB_BOVIN (Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5)

HSP 1 Score: 214.542 bits (545), Expect = 6.090e-55
Identity = 104/240 (43.33%), Postives = 145/240 (60.42%), Query Frame = -1
Query:  194 CSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNXXXXXXXXXXXXXXXXGYPISAWRYFVHHGVVTEE-------CDPYFDSTGCSH------PGCEPAYPTPKCVRKCVKK-NQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLP 865
            C TI  I DQG CGSCWAFGAVEA+SDR CIH    +N+ +S                  G+P  AW ++   G+V+         C PY     C H      P C     TPKC + C    +  ++  KH+  S+Y + ++ ++IMAEIYKNGPVE +F+VY DF  YKSGVY+H++G++MGGHA++++GWG  ++G  YW++ N WN  WG +G+FKI RG + CGIE ++VAG+P
Sbjct:   93 CPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDMLTCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPY-SIPPCEHHVNGSRPPCTGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGV-ENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEIVAGMP 330          
BLAST of CV885078 vs. ExPASy Swiss-Prot
Match: CATB_CHICK (Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 7.954e-55
Identity = 107/242 (44.21%), Postives = 142/242 (58.68%), Query Frame = -1
Query:  194 CSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXXXXXXXXXXXXXG--YPISAWRYFVHHGVVTEECDPYFDSTGC--------------SHPGCE-PAYPTPKCVRKCVKK-NQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLP 865
            C TIS I DQG CGSCWAFGAVEA+SDR C+H    +S+ V+                   YP  AWRY+   G+V+     Y    GC              S P C      TP+C R C    +  ++  KHY I++Y +    ++IMAEIYKNGPVE +F VYEDF  YKSGVY+H++G+ +GGHA++++GWG  ++G  YW+ AN WN  WG  G+FKI RG + CGIE ++VAG+P
Sbjct:   93 CPTISEIRDQGSCGSCWAFGAVEAISDRICVHTNAKVSVEVSAEDLLSCCGFECGMGCNGGYPSGAWRYWTERGLVSGGL--YDSHVGCRAYTIPPCEHHVNGSRPPCTGEGGETPRCSRHCEPGYSPSYKEDKHYGITSYGVPRSEKEIMAEIYKNGPVEGAFIVYEDFLMYKSGVYQHVSGEQVGGHAIRILGWGV-ENGTPYWLAANSWNTDWGITGFFKILRGEDHCGIESEIVAGVP 331          
BLAST of CV885078 vs. ExPASy Swiss-Prot
Match: CPR5_CAEEL (Cathepsin B-like cysteine proteinase 5 OS=Caenorhabditis elegans GN=cpr-5 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.723e-53
Identity = 110/245 (44.90%), Postives = 136/245 (55.51%), Query Frame = -1
Query:  194 CSTISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVNXXXXXXXXXXXXXXXXG--YPISAWRYFVHHGVVTEE-------CDPYFDS------TGCSHPGC-EPAYPTPKCVRKCVKKNQL---WRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLP 865
            C +I+ I DQ  CGSCWAF A EA+SDR CI  +  +N  LS                     YPI AW+++V HG+VT         C PY  +       G   P C E   PTPKCV  C  KN     +   KH+  +AY +    E I  EI  NGP+EV+FTVYEDF  Y +GVY H  G  +GGHAVK++GWG  D+G  YW++AN WN +WG  GYF+I RG NECGIE   VAG+P
Sbjct:   95 CMSINNIRDQSDCGSCWAFAAAEAISDRTCIASNGAVNTLLSSEDLLSCCTGMFSCGNGCEGGYPIQAWKWWVKHGLVTGGSYETQFGCKPYSIAPCGETVNGVKWPACPEDTEPTPKCVDSCTSKNNYATPYLQDKHFGSTAYAVGKKVEQIQTEILTNGPIEVAFTVYEDFYQYTTGVYVHTAGASLGGHAVKILGWGV-DNGTPYWLVANSWNVAWGEKGYFRIIRGLNECGIEHSAVAGIP 338          
BLAST of CV885078 vs. ExPASy Swiss-Prot
Match: CPR6_CAEEL (Cathepsin B-like cysteine proteinase 6 OS=Caenorhabditis elegans GN=cpr-6 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.658e-52
Identity = 110/253 (43.48%), Postives = 141/253 (55.73%), Query Frame = -1
Query:  167 QCSTISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVNXXXXXXXXXXXXXXXXGYPISAWRYFVHHGVVTEE-------CDPYFDSTGCSH--------PGCEPAYPTPKCVRKCVKK--NQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSKNLVKEI 868
            +C +I  I DQ  CGSCWAFGAVEA+SDR CI  H  + ++LS +                  P++AWRY+V  G+VT         C PY     C H        P     YPTPKC +KCV    ++ +   K +  SAY +  D E I  E+  +GP+E++F VYEDF +Y  GVY H  G + GGHAVKLIGWG  DDG  YW +AN WN  WG DG+F+I RG +ECGIE  VV G+P   +L   +
Sbjct:  117 KCDSIKVIRDQSSCGSCWAFGAVEAMSDRICIASHGELQVTLSADDLLSCCKSCGFGCNGGD-PLAAWRYWVKDGIVTGSNYTANNGCKPY-PFPPCEHHSKKTHFDPCPHDLYPTPKCEKKCVSDYTDKTYSEDKFFGASAYGVKDDVEAIQKELMTHGPLEIAFEVYEDFLNYDGGVYVHTGGKLGGGHAVKLIGWGI-DDGIPYWTVANSWNTDWGEDGFFRILRGVDECGIESGVVGGIPKLNSLTSRL 366          
The following BLAST results are available for this feature:
BLAST of CV885078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
CATB_MACFA1.311e-5744.00Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV... [more]
CATB_HUMAN1.311e-5744.00Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3[more]
CATB_PONAB1.712e-5744.00Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1[more]
CATB_RAT1.110e-5645.27Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2[more]
CATB_PIG2.093e-5544.58Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1[more]
CATB_MOUSE6.090e-5543.98Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2[more]
CATB_BOVIN6.090e-5543.33Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5[more]
CATB_CHICK7.954e-5544.21Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1[more]
CPR5_CAEEL9.723e-5344.90Cathepsin B-like cysteine proteinase 5 OS=Caenorha... [more]
CPR6_CAEEL1.658e-5243.48Cathepsin B-like cysteine proteinase 6 OS=Caenorha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012D12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885078 ID=CV885078; Name=CV885078; organism=Citrus sinensis; type=EST; length=868bp
TTTTTTTTTTTTTTTATGCAAGACGGGAGCTTCCCATTTCATGCCTTGAT
AGCTTAGGTTCAACGATACACCCCTATAGCTACACATTTGATATATAAAT
AACAACATGAAGGTATAGCAAAGTCTGCTCTCAAGCTGAAGCATCCTCAA
ACATATCTGCACTTGTAATCTCTTTGACAAGATTTTTGGATGAAGGCAAA
CCAGCAACCACATCCTCTTCAATACCACACTCATTTGATCCTCTTTTAAT
CTTGAAGTAACCATCCGCACCCCAGCTTCTATTCCACTGATTAGCGAGAA
TCCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACA
GCATGACCCCCCATTACATCGCCTGTGATGTGTTTGTAGACCCCAGATTT
GTAGTGAGCAAAATCCTCATAAACTGTGAAGGAAACTTCAACTGGTCCAT
TCTTGTAAATTTCTGCCATTATGTCCTCTGGATCAGAATTGATTCTATAT
GCACTAATACTGTAGTGCTTTGAATTCCTCCAAAGCTGGTTTTTCTTGAC
GCACTTCCTCACACACTTTGGAGTAGGATATGCCGGCTCACAACCAGGGT
GGGAACAGCCAGTACTATCAAAGTAGGGATCACACTCTTCGGTAACAACA
CCATGGTGGACAAAGTATCGCCATGCAGAAATTGGATAACCCCCGTCACA
ACCATCTCCACACAAAAAGCCACAGCAGGCTAAAAGATCATTAACTGATA
GAGATAGGTTCATGCCAAAATGGATGCAGAAACGATCAGATAGCGCTTCA
ACAGCACCAAAAGCCCAACAAGAACCACAATGGCCCTGATCTAGGATCCT
ACTAATGGTGCTGCATTG
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