CV885075

Overview
NameCV885075
Unique NameCV885075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885075 vs. ExPASy Swiss-Prot
Match: VTI13_ARATH (Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 2.927e-89
Identity = 163/221 (73.76%), Postives = 193/221 (87.33%), Query Frame = 3
Query:   87 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR 749
            MSQ FE YERQYCE+SA LS+KCT+A ALDGE KKQ LSEIK+G+++A+AL++KMDLEAR+L PNVK+ LL KLREYK+DLNN K EVKR+TSGN+N  ARDELLE+GMAD +  SADQR RL+MST+ L  +TDRIK+SRRT+LETEELGVSILQDLH QRQSLL AH TLHGVDDN+ KSKKILT M+RRM+R+KW +G+II+VLV AI+ ILYFKLTR
Sbjct:    1 MSQGFERYERQYCEISANLSKKCTSAIALDGEQKKQNLSEIKSGVEEAEALVKKMDLEARNLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMADTLTASADQRSRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHETLHGVDDNVGKSKKILTTMTRRMNRNKWTIGAIITVLVLAIIFILYFKLTR 221          
BLAST of CV885075 vs. ExPASy Swiss-Prot
Match: VTI11_ARATH (Vesicle transport v-SNARE 11 OS=Arabidopsis thaliana GN=VTI11 PE=1 SV=2)

HSP 1 Score: 323.553 bits (828), Expect = 9.416e-88
Identity = 160/221 (72.40%), Postives = 192/221 (86.88%), Query Frame = 3
Query:   87 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR 749
            MS VF+GYERQYCELSA LS+KC++A +LDGE KKQKLSEIK+GL++A+ LIRKMDLEAR+L PN+K+ LL KLRE+K+DLNN K EVKR+TSG +N AARDELLE+GMAD    SADQR RL+MSTERL  +TDR+K+SRRTM+ETEE+GVSILQDLH QRQSLL AH TLHGVDDNI KSKKILT M+RRM+++KW +G+II  L+ AI +ILYFKLT+
Sbjct:    1 MSDVFDGYERQYCELSASLSKKCSSAISLDGEQKKQKLSEIKSGLENAEVLIRKMDLEARTLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQRARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHETLHGVDDNIGKSKKILTDMTRRMNKNKWTIGAIIIALIAAIFIILYFKLTK 221          
BLAST of CV885075 vs. ExPASy Swiss-Prot
Match: VTI12_ARATH (Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1 SV=3)

HSP 1 Score: 303.138 bits (775), Expect = 1.317e-81
Identity = 155/221 (70.14%), Postives = 187/221 (84.62%), Query Frame = 3
Query:   87 MSQVFEGYERQYCELSAGLSRKCTAASAL-DGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLT 746
            MS VFEGYERQYCELS  LSRKC +AS L +GE KK K++EIK+G+D+AD LIRKMDLEARSLQP+ KA+ LSKLREYK+DLN LK E KRV+S +   ++R+EL+ESGMAD   VSADQRGRL MS ERL+ S+DRI+ESRR MLETEE+G+SI+QDL QQRQ+LLHAHN LHGVDD I KSKK+LTAMSRRM+R+KWI+ S+I  LV AI+LI+ +KL+
Sbjct:    1 MSDVFEGYERQYCELSTNLSRKCHSASVLSNGEEKKGKIAEIKSGIDEADVLIRKMDLEARSLQPSAKAVCLSKLREYKSDLNQLKKEFKRVSSADAKPSSREELMESGMADLHAVSADQRGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHNKLHGVDDAIDKSKKVLTAMSRRMTRNKWIITSVIVALVLAIILIISYKLS 221          
BLAST of CV885075 vs. ExPASy Swiss-Prot
Match: VTI1A_MOUSE (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Mus musculus GN=Vti1a PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.095e-27
Identity = 70/217 (32.26%), Postives = 122/217 (56.22%), Query Frame = 3
Query:   87 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYF 737
            MS  FEGYE+ +  L+A ++ K      L  + KKQ ++ ++  L++A  L+ +MDLE R + P  + M  +++R YK ++  L+ + KR        A  DE+    + DA   S +QR  LL +TERL  S+ R++   +  +ETE++G  +L++L   R+ +  A + L   D N+ KS +ILT M RR+ +++ ++  +  ++V AIL  + F
Sbjct:    1 MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRI-----AYSDEVRNELLGDAGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARDRLRDADANLGKSSRILTGMLRRIIQNRILLVILGIIVVIAILTAIAF 212          
BLAST of CV885075 vs. ExPASy Swiss-Prot
Match: VTI1A_RAT (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Rattus norvegicus GN=Vti1a PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.339e-25
Identity = 64/219 (29.22%), Postives = 124/219 (56.62%), Query Frame = 3
Query:   87 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMA--DAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYF 737
            MS  FEGYE+ +  L+A ++ K +    L  + KKQ ++ ++  L++A  L+ +MDLE R + P  + M  +++R YK ++  L+ + KR      ++   + L ++G +  + ++   ++R  LL +TERL  S+ R++   +  +ETE++G  +L++L   R+ +  A   L   D N+ KS +ILT M RR+ +++ ++  +  ++V  IL  + F
Sbjct:    1 MSADFEGYEQDFAVLTAEITSKISRVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEVRNELLGDAGNSSENQLIKLREERAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNRILLVILGIIVVITILTAITF 219          
BLAST of CV885075 vs. ExPASy Swiss-Prot
Match: VTI1A_HUMAN (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Homo sapiens GN=VTI1A PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.133e-24
Identity = 64/192 (33.33%), Postives = 105/192 (54.69%), Query Frame = 3
Query:   87 MSQVFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRR 662
            MS  FEGYE+ +  L+A ++ K      L  + KKQ ++ ++  L++A  L+ +MDLE R + P  + M  +++R YK ++  L+ + KR        A  DE+    + D    S +QR  LL +TERL  S+ R++   +  +ETE++G  +L++L   R+ +  A   L   D N+ KS +ILT M RR
Sbjct:    1 MSSDFEGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEAKELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKR-----SRIAYSDEVRNELLGDDGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDREKIQRARERLRETDANLGKSSRILTGMLRR 187          
BLAST of CV885075 vs. ExPASy Swiss-Prot
Match: VTI1_SCHPO (Vesicle transport v-SNARE protein vti1 OS=Schizosaccharomyces pombe GN=vti1 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.532e-21
Identity = 70/216 (32.41%), Postives = 114/216 (52.78%), Query Frame = 3
Query:  102 EGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAA---RDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFK 740
            E YE++Y  L A +  K    S   GE     +   +  L++ D +I +M++E   +  + + ++  ++R Y++ L   +  +K     +  +A    RDE   SG   A     DQR RLL  T RL  S+ R+ ES+R   ETE +G SIL+DLH QR  L H+   L     ++ +S + L  M+RR++ +++   +II++LV  ILL+LY K
Sbjct:    2 ETYEQEYRLLRADIEEKLNDLSK-SGE--NSVIQSCQRLLNEIDEVIGQMEIEITGIPTSERGLVNGRIRSYRSTLEEWRRHLKEEIGKSDRKALFGNRDET--SGDYIASDQDYDQRTRLLQGTNRLEQSSQRLLESQRIANETEGIGASILRDLHGQRNQLEHSLEMLGDTSGHLDRSLRTLKTMARRLAMNRFFTTAIIAILVILILLVLYSK 212          
BLAST of CV885075 vs. ExPASy Swiss-Prot
Match: VTI1_YEAST (t-SNARE VTI1 OS=Saccharomyces cerevisiae GN=VTI1 PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 1.433e-19
Identity = 70/202 (34.65%), Postives = 108/202 (53.47%), Query Frame = 3
Query:  162 ASALDGELKKQKLSEIKTGL-------DDADALIRKMDLEARSL--QPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFK 740
            A A   E   Q LS+  T L       D+   L+ +MD+E  +     + +A   +KLRE+K     +++++KR     V+   RD L   G  +A  +  DQR +LL +   L  S DR+K++ R   ETE +G  I+ DL  QR++L +A  TL   D  + KS K L  M+RR+  +K+I  +II+VL+  ILL+L+ K
Sbjct:   19 AKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWK---KTIQSDIKRPLQSLVDSGDRDRLF--GDLNASNIDDDQRQQLLSNHAILQKSGDRLKDASRIANETEGIGSQIMMDLRSQRETLENARQTLFQADSYVDKSIKTLKTMTRRLVANKFISYAIIAVLILLILLVLFSK 215          
BLAST of CV885075 vs. ExPASy Swiss-Prot
Match: VTI1A_DICDI (Vesicle transport through interaction with t-SNAREs homolog 1A OS=Dictyostelium discoideum GN=vti1A PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.585e-18
Identity = 60/218 (27.52%), Postives = 114/218 (52.29%), Query Frame = 3
Query:   96 VFEGYERQYCELSAGLSRKCTAASALDGELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILLILYFKLTR 749
            VFE  E+ +  +   ++R+        GE KK  + E++  +D+A   I +M+  A++    +K  L +K ++Y +D+   K EV+     + NQ   +    +   D      +QR  LL  +  L+ ++DR+  + +   ++E++G +IL DL +Q + +    + LH  DD I  ++KI+T ++RR++ +K I+  II +L+  I LI+  K  R
Sbjct:    3 VFERTEQNFQHVCNSITRRIKQLPNYGGEKKKIAVREVENDIDEALKFISEMEKLAQNHPQRIK--LQTKTKQYHSDIQKYKREVQLAQLQSSNQTNSNPW-SNAPDDYQSQYDNQRQHLLQGSNMLDSTSDRLLRTHQISAQSEQIGQNILMDLGKQGEQIRGMRDKLHETDDQIKSARKIMTGIARRLATNKVILSIIILLLMGIIALIICLKWLR 217          
BLAST of CV885075 vs. ExPASy Swiss-Prot
Match: VTI1B_RAT (Vesicle transport through interaction with t-SNAREs homolog 1B OS=Rattus norvegicus GN=Vti1b PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 6.022e-18
Identity = 65/197 (32.99%), Postives = 106/197 (53.81%), Query Frame = 3
Query:  180 ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDEL------LESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILL-ILYFKLTR 749
            E KK+ + +      +A+  + +M+ E R      +  ++SKLR Y+ DL  L  EV R T        R +L      LE+   + +     QR  LL  TE LN +T  I+ S R   ET+++G  I+++L +QR  L    + L   ++N+SKS+KIL +MSR++  +K ++ S+I VL  AIL+ ++Y+K  R
Sbjct:   39 EEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNSMMSKLRNYRKDLAKLHREV-RSTPLTATPGGRGDLKFGTYTLENEHLNRLQ---SQRALLLQGTESLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSRKVITNKLLL-SVIIVLELAILVGLVYYKFFR 230          
The following BLAST results are available for this feature:
BLAST of CV885075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
VTI13_ARATH2.927e-8973.76Vesicle transport v-SNARE 13 OS=Arabidopsis thalia... [more]
VTI11_ARATH9.416e-8872.40Vesicle transport v-SNARE 11 OS=Arabidopsis thalia... [more]
VTI12_ARATH1.317e-8170.14Vesicle transport v-SNARE 12 OS=Arabidopsis thalia... [more]
VTI1A_MOUSE1.095e-2732.26Vesicle transport through interaction with t-SNARE... [more]
VTI1A_RAT1.339e-2529.22Vesicle transport through interaction with t-SNARE... [more]
VTI1A_HUMAN1.133e-2433.33Vesicle transport through interaction with t-SNARE... [more]
VTI1_SCHPO1.532e-2132.41Vesicle transport v-SNARE protein vti1 OS=Schizosa... [more]
VTI1_YEAST1.433e-1934.65t-SNARE VTI1 OS=Saccharomyces cerevisiae GN=VTI1 P... [more]
VTI1A_DICDI1.585e-1827.52Vesicle transport through interaction with t-SNARE... [more]
VTI1B_RAT6.022e-1832.99Vesicle transport through interaction with t-SNARE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012D11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885075 ID=CV885075; Name=CV885075; organism=Citrus sinensis; type=EST; length=877bp
ATTTCACCTGGATCTTCCGGTGCCCAATTTCCTTCTCACCGATCGTCTCC
ACGATCACTTCCCGTTGGTGAGGGATTCGGGCGAAGATGAGTCAGGTGTT
TGAAGGATACGAGCGCCAATACTGCGAGCTCTCTGCTGGATTATCGCGGA
AGTGCACGGCGGCAAGTGCTCTTGATGGAGAGCTGAAAAAGCAGAAACTT
TCTGAAATTAAAACTGGATTGGATGATGCTGATGCTCTGATTCGGAAAAT
GGACCTAGAGGCAAGAAGTTTGCAGCCGAATGTGAAGGCAATGCTTCTGT
CTAAGTTAAGAGAATACAAAACCGATTTGAACAATTTGAAAAATGAAGTG
AAAAGAGTCACATCAGGTAATGTCAACCAGGCTGCCCGCGATGAGTTGTT
GGAGTCGGGAATGGCAGATGCAATGATGGTATCGGCTGATCAAAGGGGAA
GATTGTTGATGTCAACAGAGAGACTAAACCACTCGACAGACCGAATTAAG
GAGAGTAGAAGAACAATGCTGGAAACGGAAGAGCTTGGAGTCTCGATCCT
GCAAGATTTGCATCAACAACGCCAATCTCTTCTGCACGCTCATAACACGC
TCCATGGGGTGGATGACAATATTAGCAAAAGCAAGAAGATCCTGACAGCC
ATGTCAAGAAGGATGAGCAGGGACAAATGGATCATGGGCTCCATAATCTC
AGTTCTTGTCTTTGCTATTTTACTTATACTTTATTTTAAGCTCACTCGTT
AGCCTGCCGGTGTGCAAGTTGTTGAATACATTTGCAACCTGTGCTGCTTG
GCATCATTCACCCAATGCTTATGGAGTAACCTTTGCAAATTCTGCATGTA
TGTGATACAGCCCGTGACCCCCTGTAC
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