CV885070

Overview
NameCV885070
Unique NameCV885070
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885070 vs. ExPASy Swiss-Prot
Match: METE_SOLSC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Solenostemon scutellarioides GN=MET PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 6.248e-27
Identity = 60/62 (96.77%), Postives = 60/62 (96.77%), Query Frame = 3
Query:   15 RIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLASAK 200
            RIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKY EVKPAL NMVAAAKLLRTQLASAK
Sbjct:  703 RIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYAEVKPALENMVAAAKLLRTQLASAK 764          
BLAST of CV885070 vs. ExPASy Swiss-Prot
Match: METE_CATRO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.289e-26
Identity = 57/62 (91.94%), Postives = 60/62 (96.77%), Query Frame = 3
Query:   15 RIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLASAK 200
            RIPSTEEIADRINKMLAVL+TNILWVNPDCGLKTRKY EVKPAL NMV+AAKL+RTQLASAK
Sbjct:  704 RIPSTEEIADRINKMLAVLDTNILWVNPDCGLKTRKYAEVKPALENMVSAAKLIRTQLASAK 765          
BLAST of CV885070 vs. ExPASy Swiss-Prot
Match: METE_ARATH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Arabidopsis thaliana GN=CIMS PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.637e-25
Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = 3
Query:   15 RIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLASAK 200
            RIPS+EEIADR+NKMLAVLE NILWVNPDCGLKTRKYTEVKPAL NMV AAKL+R+QLASAK
Sbjct:  704 RIPSSEEIADRVNKMLAVLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLIRSQLASAK 765          
BLAST of CV885070 vs. ExPASy Swiss-Prot
Match: METE_MESCR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesembryanthemum crystallinum GN=METE PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.336e-23
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 3
Query:   15 RIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLASAK 200
            RIP TEE+ADRI KMLAVLE+N+LWVNPDCGLKTRKY EV PALSNMVAAAK LR +LASAK
Sbjct:  704 RIPPTEELADRIRKMLAVLESNVLWVNPDCGLKTRKYGEVNPALSNMVAAAKQLRQELASAK 765          
BLAST of CV885070 vs. ExPASy Swiss-Prot
Match: METE_CYTH3 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=metE PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.494e-12
Identity = 32/60 (53.33%), Postives = 46/60 (76.67%), Query Frame = 3
Query:   15 RIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLAS 194
            RIP+T+E+AD +NK + VL    +WVNPDCGLKTR++ E + AL NMVAAA+ +R ++ +
Sbjct:  714 RIPTTDEMADLLNKAMHVLPVRNIWVNPDCGLKTRRWPETEAALINMVAAAQKIRKEITT 773          
BLAST of CV885070 vs. ExPASy Swiss-Prot
Match: METE_BIFAA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=metE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.265e-11
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 3
Query:   15 RIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLA 191
            RIPS +EI DRI ++L  ++   +W+NPDCGLKTR   E  P+L N+VAAAK +R +LA
Sbjct:  709 RIPSEQEIEDRIYEILKKMDVEKVWINPDCGLKTRGNAETWPSLENLVAAAKAVRAKLA 767          
BLAST of CV885070 vs. ExPASy Swiss-Prot
Match: METE_DESRM (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=metE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.157e-11
Identity = 30/58 (51.72%), Postives = 44/58 (75.86%), Query Frame = 3
Query:   15 RIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQL 188
            R+PS EE+ ++I  ++ VL  + LW+NPDCGLKTRK+ E++ +LSNMV AA+ +R  L
Sbjct:  701 RVPSVEELEEKIRNLMLVLPPSKLWINPDCGLKTRKWDEIRWSLSNMVKAAQHIRLGL 758          
BLAST of CV885070 vs. ExPASy Swiss-Prot
Match: METE_DICDI (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Dictyostelium discoideum GN=metE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.818e-11
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 3
Query:   15 RIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLR 179
            RIPS E++ DR+ +ML  L TN+LW+NPDCGLKTR+    + AL NMV  AK  R
Sbjct:  764 RIPSVEDMKDRVEQMLKYLSTNLLWINPDCGLKTREPETTRLALINMVKVAKQFR 818          
BLAST of CV885070 vs. ExPASy Swiss-Prot
Match: METE_BRAJA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bradyrhizobium japonicum GN=metE PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.680e-11
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 3
Query:   15 RIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLR 179
            R+P T+E+ + I      L+ + LWVNPDCGLKTRK+ EV+PAL+NMVAAA+ LR
Sbjct:  719 RVPETDEMKELIVLARTRLQDSQLWVNPDCGLKTRKWEEVRPALANMVAAARELR 773          
BLAST of CV885070 vs. ExPASy Swiss-Prot
Match: METE_BLOPB (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Blochmannia pennsylvanicus (strain BPEN) GN=metE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.680e-11
Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = 3
Query:   21 PSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQLASA 197
            P+  ++  RIN++L  +    LW+NPDCGLKTR + E+K +L+NMV+AAKLLR Q  S+
Sbjct:  706 PTQNDLIRRINQLLKYIPEQRLWINPDCGLKTRSWPEIKHSLNNMVSAAKLLRKQFYSS 764          
The following BLAST results are available for this feature:
BLAST of CV885070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
METE_SOLSC6.248e-2796.775-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CATRO5.289e-2691.945-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ARATH7.637e-2588.715-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MESCR9.336e-2383.875-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CYTH31.494e-1253.335-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BIFAA1.265e-1154.245-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_DESRM2.157e-1151.725-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_DICDI2.818e-1156.365-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BRAJA3.680e-1158.185-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BLOPB3.680e-1150.855-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012D07_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885070 ID=CV885070; Name=CV885070; organism=Citrus sinensis; type=EST; length=477bp
GACATCCACTCTCCAGAATACCATCAACTGAAGAAATTGCTGACAGAATC
AACAAGATGCTTGCTGTGCTAGAAACCAACATTTTGTGGGTTAACCCTGA
CTGTGGTCTTAAGACTCGCAAGTACACTGAGGTGAAGCCAGCCCTCTCAA
ACATGGTCGCTGCTGCCAAGCTACTCCGCACCCAGCTTGCCAGTGCCAAG
TGAGTGGTTCTGGAGATTGGAGGGATACTTCCTGAGCCATTGATTTTTTT
TTTTTTTCACTTTAAACAAAGAAAGAAAATTCCTGTCTTATTACCTATTC
GAATAACTGTGGGTCGTGATGTGATGAAAATTTTCCGTATGCATATTATG
CACTATTGAGCAATTGGCTTCTATTTTTCTTTGCTTGTATTTTCCGTTTT
TAAAGGCCCCGGCTTGCTATCAGTGGCCGTAAATCGATGGAATACCTTTA
CTGGTTTGTGCATTAATGTTGTTGCCT
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