CV885059

Overview
NameCV885059
Unique NameCV885059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV885059 vs. ExPASy Swiss-Prot
Match: HDA5_ARATH (Histone deacetylase 5 OS=Arabidopsis thaliana GN=HDA5 PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.497e-77
Identity = 142/217 (65.44%), Postives = 172/217 (79.26%), Query Frame = 3 
Query:   15 ATPWRSELSKVDVFYASFGSNMWKSRFLCYIEGGQVEGMQKPCSGSKDRNPPKEILWKTFPHRLFFGRDSSHTWGPGGVAFLNPECDCRHKAYLCLYRITLEQFNDVLLQENVYSDDVSSPLFDTNDLNSVANKKAVSLEALKNGWYHNVVYLGKEHGIPILTMTCSLSAVGKFKSGEFPLRAPAPAYTNTLIKGLVEGKQLSEEEAKAYIHEASTK 665
            +T WR++L+KVDV+YASFGSNMWK RFLCYI+GGQV+G++K C GS D++PPKE +W+TFPHRLFFGR+SS  WG GGVAF NP  +   + ++CLYRITLEQFNDVL QEN  + D  SP+FD   L  V NK ++ LEA  N WY NVV LGKE  IPILTMTC+LSAV KFKSGE P+R PA AY NTLI+GLVEG +LS+EEA+AYI +A +K
Sbjct:  443 STSWRADLAKVDVWYASFGSNMWKPRFLCYIQGGQVDGLKKVCVGSMDKSPPKETVWETFPHRLFFGRESSVGWGVGGVAFTNPLANLIDQTHMCLYRITLEQFNDVLSQENGLNVDSDSPVFDLAALQLVDNKGSI-LEAPLNSWYGNVVCLGKERDIPILTMTCTLSAVEKFKSGEIPIRPPAKAYANTLIRGLVEGGRLSKEEAEAYIDKAVSK 658
The following BLAST results are available for this feature:
BLAST of CV885059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HDA5_ARATH1.497e-7765.44Histone deacetylase 5 OS=Arabidopsis thaliana GN=H... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_012D02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885059 ID=CV885059; Name=CV885059; organism=Citrus sinensis; type=EST; length=742bp
CTGAACTGGGGACGGCTACCCCATGGAGATCAGAACTCTCAAAAGTTGAT
GTTTTTTATGCTAGTTTTGGATCGAATATGTGGAAATCAAGATTCCTCTG
CTATATTGAAGGTGGACAGGTAGAAGGTATGCAAAAGCCATGTTCTGGTT
CAAAGGATAGGAACCCACCGAAAGAGATTTTGTGGAAAACTTTCCCTCAC
CGTTTATTCTTTGGTCGTGATTCCTCTCACACATGGGGTCCTGGAGGGGT
TGCTTTTCTTAACCCTGAATGTGACTGTCGACATAAAGCTTACTTGTGTC
TGTACAGAATTACGCTAGAACAGTTCAATGATGTTTTACTTCAGGAAAAT
GTCTATAGTGATGACGTGAGTTCTCCTTTATTTGATACGAATGATTTAAA
CTCTGTTGCAAACAAGAAGGCTGTTTCCTTGGAGGCTCTCAAGAATGGCT
GGTATCATAATGTTGTTTACCTGGGGAAGGAGCATGGTATCCCAATACTG
ACAATGACGTGCTCACTTTCAGCTGTTGGAAAATTCAAATCAGGGGAGTT
CCCTTTGCGTGCCCCCGCCCCGGCATATACCAATACCTTAATAAAAGGCC
TGGTAGAAGGGAAACAGCTCTCGGAAGAGGAAGCCAAGGCTTACATACAC
GAAGCTTCCACTAAGCGACTGTGATTGCAACTGCTTTGCTTGCTGTAAAT
GAAGTGAAAACCTTGCCACATCAGAGTGAAAAAAAAGAAAAA
back to top