CV885020

Overview
NameCV885020
Unique NameCV885020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885020 vs. ExPASy Swiss-Prot
Match: AOC2_ARATH (Allene oxide cyclase 2, chloroplastic OS=Arabidopsis thaliana GN=AOC2 PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 9.876e-68
Identity = 138/252 (54.76%), Postives = 176/252 (69.84%), Query Frame = 2
Query:   98 MACSSAALRTISSASVKLANSTSPTKSSSILVPFKLNNPFLITQCPHLQAATSCNFTVPKRSFTCR---------SQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEP 823
            MA S+ +L++IS  ++   +       SS+L   K      I+       +   +F+ P  SFT +         SQ  + ++PRP+KVQEL VYEINE DR SP  L+ +   +  LGDLVPF+NKLYTGDL+KR+GITAGLC++IE+ PEKKG+R+EA YSFYFGDYGH++VQGPYLTYED++LA+TGG+GIFEG YGQVKLQQLV+P KLFYTFYLKG+  DLP  L G PV P   +EP+P AKA EP
Sbjct:    1 MASSAVSLQSISMTTLNNLSCNQQFHRSSLLGSSKSFQNLGIS-------SNGSDFSYPS-SFTAKKNLTASRALSQNGNIENPRPSKVQELSVYEINELDRHSPKILKNAFSLMFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEP 244          
BLAST of CV885020 vs. ExPASy Swiss-Prot
Match: AOC4_ARATH (Allene oxide cyclase 4, chloroplastic OS=Arabidopsis thaliana GN=AOC4 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.290e-67
Identity = 134/245 (54.69%), Postives = 172/245 (70.20%), Query Frame = 2
Query:   98 MACSSAALRTISSASVKLANSTSPTKSSSIL-VPFKLNNPFLITQCPHLQAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVN-SLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEP 823
            M  +S+A  +IS  +++  +    +  S+ L      +N  + +  P L        +     F     ++S+D  RPTK+QEL+VYE NE DR SPA L+L +KP    LGDLVPF+NKLYTGDL KR+GITAGLC+LI++ PEKKGDR+EA YSFYFGDYGHI+VQGPYLTYEDT+LA+TGGSG+FEG YGQVKL+QLV+P KLFYTFYLKG+  DLP  L GK V+P   V+P+  A+A +P
Sbjct:    1 MIMASSAAASISMITLRNLSRNHQSHQSTFLGFSRSFHNQRISSNSPGLSTRARSTTSSTGGFFRTICSSSSNDYSRPTKIQELNVYEFNEGDRNSPAVLKLGKKPDQLCLGDLVPFTNKLYTGDLTKRIGITAGLCVLIQHVPEKKGDRFEASYSFYFGDYGHISVQGPYLTYEDTFLAITGGSGVFEGAYGQVKLRQLVYPTKLFYTFYLKGVAADLPVELTGKHVEPSKEVKPAAEAQATQP 245          
BLAST of CV885020 vs. ExPASy Swiss-Prot
Match: AOC3_ARATH (Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.753e-67
Identity = 142/252 (56.35%), Postives = 178/252 (70.63%), Query Frame = 2
Query:   98 MACSSAALRTISSASVKLANSTSPTKSS--SILVPFK--LNNPFLITQCPHL----QAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVN-SLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEP 823
            MA SSAA+ ++ S S+   N+ S    S  S L+ F     N  + +  P      ++ TS N  V +  F   +    +++ RP+K+QEL+VYE+NE DR SPA L+L +KP    LGDLVPF+NKLYTGDL+KR+GITAGLC+LI++ PEK GDR+EA YSFYFGDYGH++VQG YLTYEDT+LAVTGGSGIFEG YGQVKL+QLV+P KLFYTFYLKG+  DLP  L G  V P   V+P+P AKA EP
Sbjct:    1 MASSSAAM-SLESISMTTLNNLSRNHQSHRSSLLGFSRSFQNLGISSNGPDFSSRSRSTTSKNLNVTRAFFW--NWGKKTENSRPSKIQELNVYELNEGDRNSPAVLKLGKKPTELCLGDLVPFTNKLYTGDLKKRVGITAGLCVLIQHVPEKSGDRFEASYSFYFGDYGHLSVQGQYLTYEDTFLAVTGGSGIFEGAYGQVKLRQLVYPTKLFYTFYLKGLANDLPLELTGTAVTPSKDVKPAPEAKAMEP 249          
BLAST of CV885020 vs. ExPASy Swiss-Prot
Match: AOC1_ARATH (Allene oxide cyclase 1, chloroplastic OS=Arabidopsis thaliana GN=AOC1 PE=1 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 8.360e-67
Identity = 138/247 (55.87%), Postives = 178/247 (72.06%), Query Frame = 2
Query:   98 MACSSAALRTISSASVKLANSTSPTKSSSILVPFKLNNPFLITQC-PHLQAATSCNFTVPKRSFTCRSQANS---SDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEP 823
            MA S+ +L++IS  ++   + +     SS+L   K    F I+   P   + TS  FT  K+    R+ + +   +++PRP+KVQEL VYEIN+ DR SP  L+ +      LGDLVPF+NKLYTGDL+KR+GITAGLC++IE+ PEK GDR+EA YSFYFGDYGH++VQGPYLTYED++LA+TGG+GIFEG YGQVKLQQLV+P KLFYTFYLKG+  DLP  L+G PV P   VEP+P AKA +P
Sbjct:    1 MASSTISLQSISMTTLNNLSYSKQFHRSSLLGFSKSFQNFGISSNGPGSSSPTS--FTPKKKLTPTRALSQNLGNTENPRPSKVQELSVYEINDLDRHSPKILKNAFSFRFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELIGTPVPPSKDVEPAPEAKALKP 245          
The following BLAST results are available for this feature:
BLAST of CV885020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AOC2_ARATH9.876e-6854.76Allene oxide cyclase 2, chloroplastic OS=Arabidops... [more]
AOC4_ARATH1.290e-6754.69Allene oxide cyclase 4, chloroplastic OS=Arabidops... [more]
AOC3_ARATH3.753e-6756.35Allene oxide cyclase 3, chloroplastic OS=Arabidops... [more]
AOC1_ARATH8.360e-6755.87Allene oxide cyclase 1, chloroplastic OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012A08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885020 ID=CV885020; Name=CV885020; organism=Citrus sinensis; type=EST; length=824bp
CGGTATTTTCCCATCAGAAAATTCCCTCACTTTCTTTCCTCCCAAACAGT
CAAACACTGATTTAACAACAGAAATTATCAACAAAAGATTATCCCCAATG
GCTTGTTCAAGCGCCGCTTTGAGAACCATCTCTTCTGCTTCTGTCAAGCT
AGCCAATTCAACATCACCAACCAAATCATCATCAATTTTAGTACCATTTA
AGCTGAATAATCCTTTTCTAATCACTCAATGCCCCCACCTTCAAGCCGCC
ACAAGCTGCAACTTCACAGTACCCAAAAGATCTTTCACTTGCAGAAGCCA
AGCTAACTCATCAGATGATCCCAGACCCACCAAAGTTCAAGAACTTCATG
TGTATGAGATCAACGAGCGAGATCGTGGCAGTCCAGCTTATCTTCGCTTG
AGCCAGAAACCTGTGAATTCACTTGGTGATCTTGTCCCTTTTAGCAACAA
ATTATATACTGGAGACCTGCAAAAGAGGTTGGGAATAACAGCGGGTTTAT
GCATTTTGATCGAAAACAAACCAGAAAAGAAAGGTGACCGATATGAAGCA
ATTTACAGCTTCTACTTTGGAGACTATGGTCACATAGCTGTGCAAGGACC
GTATTTGACCTATGAGGACACTTATCTGGCTGTGACTGGTGGATCCGGCA
TCTTCGAGGGAGTGTATGGGCAGGTTAAGCTGCAGCAACTTGTGTTTCCA
TTTAAGCTGTTTTACACATTTTATTTGAAGGGCATTAAGGACTTGCCAGA
AGTGCTTCTGGGGAAGCCGGTGGATCCGCACCCTGGTGTTGAGCCCTCCC
CTGCTGCTAAGGCTTGTGAGCCTG
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