CV885015

Overview
NameCV885015
Unique NameCV885015
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length443
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV885015 vs. ExPASy Swiss-Prot
Match: PSA6_SOYBN (Proteasome subunit alpha type-6 OS=Glycine max GN=PAA1 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 6.395e-14
Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = -2 
Query:  314 SVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 442
            SVLQEDFKA+EIEVGVV K+NPEFRVL+ +EIDEHLTAISERD
Sbjct:  204 SVLQEDFKATEIEVGVVRKDNPEFRVLTTDEIDEHLTAISERD 246
[Close]
BLAST of CV885015 vs. ExPASy Swiss-Prot
Match: PSA6_TOBAC (Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.425e-13
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = -2 
Query:  314 SVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 442
            SVLQEDFKASEIEVGVV KE+P FRVL+ EEIDEHLTAISERD
Sbjct:  204 SVLQEDFKASEIEVGVVKKEDPIFRVLTTEEIDEHLTAISERD 246
[Close]
BLAST of CV885015 vs. ExPASy Swiss-Prot
Match: PSA6A_ARATH (Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 5.413e-13
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = -2 
Query:  314 SVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 442
            SVLQEDFKA+EIEVGVV  ENPEFR L+ EEI+EHLTAISERD
Sbjct:  204 SVLQEDFKATEIEVGVVRAENPEFRALTTEEIEEHLTAISERD 246
[Close]
BLAST of CV885015 vs. ExPASy Swiss-Prot
Match: PSA6B_ARATH (Proteasome subunit alpha type-6-B OS=Arabidopsis thaliana GN=PAA2 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.879e-11
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = -2 
Query:  314 SVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 442
            SVLQEDFKA+EIEVGVV  ++P FR L  EEIDEHLTAISERD
Sbjct:  204 SVLQEDFKATEIEVGVVRADDPLFRSLRTEEIDEHLTAISERD 246
[Close]
BLAST of CV885015 vs. ExPASy Swiss-Prot
Match: PSA6_ORYSJ (Proteasome subunit alpha type-6 OS=Oryza sativa subsp. japonica GN=PAA1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = -2 
Query:  314 SVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 442
            SVLQEDFKA+EIEVGVV K++  FR L+ EEID+HLTAISERD
Sbjct:  204 SVLQEDFKATEIEVGVVRKDDRVFRALTTEEIDQHLTAISERD 246
The following BLAST results are available for this feature:
BLAST of CV885015 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSA6_SOYBN6.395e-1486.05Proteasome subunit alpha type-6 OS=Glycine max GN=... [more]
PSA6_TOBAC1.425e-1388.37Proteasome subunit alpha type-6 OS=Nicotiana tabac... [more]
PSA6A_ARATH5.413e-1383.72Proteasome subunit alpha type-6-A OS=Arabidopsis t... [more]
PSA6B_ARATH3.879e-1179.07Proteasome subunit alpha type-6-B OS=Arabidopsis t... [more]
PSA6_ORYSJ5.067e-1176.74Proteasome subunit alpha type-6 OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012A04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885015 ID=CV885015; Name=CV885015; organism=Citrus sinensis; type=EST; length=443bp
TTTTTTTAGGCAGGAAATCCTAAAATTGCCATTCATCATAATAATAACAA
TGGCCATGAAAGGCACTAGTCAATAGTCGCTATCAAGCCAATATAGTAGT
AAAAGTCAACAGCTACCACTAGCACAAAGCACTTCCCCTGGTTGGCACTG
CATAGTCACATAACTTGTTTTTCAACGTTTTGTTTTCTGCTTTGGAGGGC
AATGGCTGTGTGTATTACCGAATACACTTAAAATTATAAATTCAAGATAC
AGGGGAAAAGCATTTTTGTTTTTTGGTTTCAGCATTTGTGACTGGGCATG
AAACCACCTCCTAATCTCGTTCACTTATAGCAGTCAAGTGCTCATCGATC
TCCTCGATGGACAAAACTCTGAATTCTGGATTCTCCTTGCTCACCACGCC
AACCTCAATCTCACTCGCCTTAAAATCCTCTTGCAGGACTGAT
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