CV885009

Overview
NameCV885009
Unique NameCV885009
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length939
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885009 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.311e-33
Identity = 89/224 (39.73%), Postives = 123/224 (54.91%), Query Frame = -2
Query:  270 HGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 938
            HGG F  S A+  +Y  +  +L     A+ VSV  RRAPE+R P A+DDG+  L W+ S S          WL    D + R+FL GDSSGGN+VH VA RA +   S + V G I ++P F   ER++SE        +T+   D +    LP   D+ HP   P GP +  ++GL  P  L+ VAG DLI+D +++Y E +KKAG++V+LL        FYL
Sbjct:  111 HGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNSSS----------WLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVE---SRIDVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLSFPKSLVVVAGLDLIQDWQLKYAEGLKKAGQEVKLLYLEQATIGFYL 321          
BLAST of CV885009 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.416e-30
Identity = 79/212 (37.26%), Postives = 112/212 (52.83%), Query Frame = -2
Query:  303 HGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELL 938
            HGG F  S A+  +Y     +L      + VSV  RR+PEHR P A+DDG+ AL W++S    Q+    N +         V+L GDSSGGN+ H VA RA +  +   +V G I +HP F  QER++SE        +T+   D +    LP   D+ HP   P GP    + G+  P  L+ VAG DL++D ++ Y + +KK G +V LL
Sbjct:  113 HGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRVWLQSGKDSNVY---------VYLAGDSSGGNIAHNVAVRATNEGV---KVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLKGVNFPKSLVVVAGLDLVQDWQLAYVDGLKKTGLEVNLL 312          
BLAST of CV885009 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.416e-30
Identity = 83/224 (37.05%), Postives = 118/224 (52.68%), Query Frame = -2
Query:  270 HGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 938
            HGG F  S A+  +Y  +  +L      + VSV  RRAPE+  P A+DDG+ AL W+ S S          WL    D +  +FL GDSSGGN+ H VA RAG++ +    V G I ++P F   ER++SE        +T+   D +    LP   D+ HP   P  P    ++G+  P  L+ VAG DLI+D ++ Y E +KKAG++V+L+        FYL
Sbjct:  113 HGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRS----------WLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGID---VLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLKKAGQEVKLMHLEKATVGFYL 323          
BLAST of CV885009 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.030e-27
Identity = 78/223 (34.98%), Postives = 111/223 (49.78%), Query Frame = -2
Query:  270 HGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 938
            HGG F  S A   +Y  +  +  K    + VSV  RRAPEHR P A+DDG+ AL W+ S    ++               RVFL GDSSGGN+ H VA RA D     ++V G I ++  F   ER++SE        +TL   D +    LP ++D+ HP   P GP    + GL     L+ V+G DL  D ++ Y +A+++ G  V+++        FYL
Sbjct:  120 HGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQPFMRSGGDAQ---------ARVFLSGDSSGGNIAHHVAVRAAD---EGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCDRQLAYADALREDGHHVKVVQCENATVGFYL 330          
BLAST of CV885009 vs. ExPASy Swiss-Prot
Match: YKN2_SCHPO (AB hydrolase superfamily protein B1A11.02 OS=Schizosaccharomyces pombe GN=SPAPB1A11.02 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.058e-11
Identity = 58/203 (28.57%), Postives = 94/203 (46.31%), Query Frame = -2
Query:  270 ICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGDADLSPLRVAG---AIP--IHPGFLRQE---RSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 854
            +CVSV  R APE + P A +D  ++  W+ S ++ +  A            +  FL G S+GGN V  ++  A D  + P  + G    +P  IHP  L +E   + +S  E   +P++T  ++D F     P       P +  + P   P     LPP      G D ++D  + Y +A+K AG +  L+V  G+ H F++
Sbjct:  123 VCVSVDYRLAPESKFPVAHNDAIDSFKWVAS-NIEKLGANPK---------RGFFLGGASAGGNFVSVLSHIARDEKIKP-ELTGLWHMVPTLIHPADLDEETMAQFRSYKETIHAPVITPKIMDIFFENYQPT------PKSPLVNPLYYPTGHKDLPPSFFQCCGWDPLRDEGIAYEKALKAAGNETRLIVYEGVPHCFWV 308          
The following BLAST results are available for this feature:
BLAST of CV885009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GI1L3_ARATH4.311e-3339.73Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L2_ARATH3.416e-3037.26Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L1_ARATH3.416e-3037.05Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GID1_ORYSJ6.030e-2734.98Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
YKN2_SCHPO6.058e-1128.57AB hydrolase superfamily protein B1A11.02 OS=Schiz... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011H11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885009 ID=CV885009; Name=CV885009; organism=Citrus sinensis; type=EST; length=939bp
TTCCATTTATTGTAATAACTTGGAGCACAACTAAAACAATGTAAAAATCA
CACGCTTGCAATGTTACTTATTTTTGTATATTTTAATTGGGTTGTTAAGT
TACGACAAATGTAACTTAAGAAAAACCCCACCATTAATCGGATAATCAAC
TATTTATGGATTAAAAAATTGATAATTGATCAGTGCTTCCTCATAAACTC
CGCTATTCCTTGAAAAAGACTACAAGTTTGAGCAGCAGTGTTTGGGTCCA
TATCGACTGCAATCTTGTCGAGATAAAAACTGTGACCCATTCCAGGATTC
ACCAACAACTCCACATCCTTTCCAGCCTTTTTCATGGCTTCATAATATTC
CATCTCAGTGTCCTTAATCAAGTCATTACCCGCCACGCACAGCAGAAACG
GAGGCAGCTTCAGACCGTCGATCGGCGACGCAGCCGGCCCCATTGGACAG
GTGTACGGATGCCCCTTGTCGCTGTTCAACGGCAGGGCAAAGCTCAAGAA
CTTGTCCACCATGTCCAGAGTCAGAAGAGGTGACTGCGGGTTTTCCAACT
CCGACTTGCTCCTTTCCTGCCGGAGGAAACCCGGATGAATCGGAATCGCT
CCGGCCACACGCAACGGGCTCAAGTCCGCGTCACCTGCACGTGCCGCCAC
TTCATGCACTACGTTCCCTCCGGAGCTGTCTCCAATGAGGAAGACGCGTT
GAAAATCCACATGTTCAGTCAGCCAATTATTCTCCCGAGCCTGAGCCTGA
GCCAGTGATAGTGACCGGAGCCAAAGGAGGGCTTCGAAACCATCGTCGAA
AGCGGCCGGGAGGCGGTGCTCCGGGGCCCGCCGGAGATAGACGGAGACAC
AGATAGCCGGGACAGATTTTGCAAGCTTCGTGTAAACGTGATAGTACATG
TACCAATCAGCTTGGCTAACGCAAAAACCACCCCCATGA
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